./biology/bwa, Map low-divergent sequences against a large reference genome

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Branch: CURRENT, Version: 0.7.17nb7, Package name: bwa-0.7.17nb7, Maintainer: bacon

BWA is a software package for mapping low-divergent sequences against a large
reference genome, such as the human genome.


Required to run:
[lang/perl5]

Required to build:
[pkgtools/cwrappers]

Master sites:

Filesize: 227.142 KB

Version history: (Expand)

CVS history: (Expand)


   2023-05-18 16:05:15 by Jason Bacon | Files touched by this commit (5) 
Log message:
biology/bwa: Add support for aarch64 via devel/simde

May also work on other 64-bit architectures, but untested
   2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) 
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages
   2022-06-28 13:38:00 by Thomas Klausner | Files touched by this commit (3952) 
Log message:
*: recursive bump for perl 5.36
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Remove SHA1 hashes for distfiles
   2021-05-24 21:56:06 by Thomas Klausner | Files touched by this commit (3575) 
Log message:
*: recursive bump for perl 5.34
   2020-08-31 20:13:29 by Thomas Klausner | Files touched by this commit (3631) 
Log message:
*: bump PKGREVISION for perl-5.32.
   2020-01-26 06:26:29 by Roland Illig | Files touched by this commit (189) 
Log message:
all: migrate some SourceForge homepage URLs back from https to http

https://mail-index.netbsd.org/pkgsrc-changes/2020/01/18/msg205146.html

In the above commit, the homepage URLs were migrated from http to https,
assuming that SourceForge would use the same host names for both http and
https connections. This assumption was wrong. Their documentation at
https://sourceforge.net/p/forge/documentation/Custom%20VHOSTs/ states
that the https URLs use the domain sourceforge.io instead.

To make the homepages from the above commit reachable again, pkglint has
been extended to check for reachable homepages. This check is only
enabled when the --network command line option is given.

Each of the homepages that referred to https://$project.sourceforge.net
before was migrated to https://$project.sourceforge.io (27), and if that
was not reachable, to the fallback URL http://$project.sourceforge.net
(163).