./math/R-gstat, Uni/multivariable geostatistical modelling, prediction and simulation

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Branch: CURRENT, Version: 1.1.2, Package name: R-gstat-1.1.2, Maintainer: pkgsrc-users

Variogram modelling; simple, ordinary and universal point or block
(co)kriging, sequential Gaussian or indicator (co)simulation;
variogram and variogram map plotting utility functions.


Required to run:
[math/R] [math/blas] [math/R-sp] [math/R-spacetime] [math/R-FNN]

Required to build:
[pkgtools/cwrappers]

Master sites: (Expand)


Version history: (Expand)


CVS history: (Expand)


   2017-07-10 14:27:19 by Joerg Sonnenberger | Files touched by this commit (1)
Log message:
Don't hard-code dependency on g95. It seems unnecessary as well.
From Thomas Orgis.
   2016-02-25 02:59:08 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 1.1.2
Add missing DEPENDS

Upstream changes:
Changes in version 1.1-2 (2016-02-22)

    fixed memcpy for overlapping regions error, found in valgrind checks by \ 
Brian Ripley

    fixed a few more (small) memory leaks

Changes in version 1.1-1 (2016-02-19)

    Further cleaned up C source code, got rid of lex and yacc files

    Improve fit.variogram to choose initial values for range, sill and nugget \ 
before fitting, and fit over a range of model types

    allow NA values in vgm

    Fixed https://github.com/edzer/gstat/issues/1

Changes in version 1.1-0 (2015-10-17)

    remove meschach matrix library, rewrote interface, link to R's lapack

    improve notification in case of singular matrices

    remove all C code that was not used by R package gstat

    add Makevars, remove configure

    remove links to ai-geostats.org

    wrap fit.StVariogram example in dontrun

Changes in version 1.0-26 (2015-08-26)

    use ordered spatial index when selecting nearest strongest correlated \ 
neighbours in local kriging to avoid warning of spacetime

    update spatio-temporal geostatitics vignettes; add R Journal draft

    add spatio-temporal PM10 interpolation movie (mp4)
   2015-11-04 00:33:46 by Alistair G. Crooks | Files touched by this commit (262)
Log message:
Add SHA512 digests for distfiles for math category

Problems found locating distfiles:
	Package dfftpack: missing distfile dfftpack-20001209.tar.gz
	Package eispack: missing distfile eispack-20001130.tar.gz
	Package fftpack: missing distfile fftpack-20001130.tar.gz
	Package linpack: missing distfile linpack-20010510.tar.gz
	Package minpack: missing distfile minpack-20001130.tar.gz
	Package odepack: missing distfile odepack-20001130.tar.gz
	Package py-networkx: missing distfile networkx-1.10.tar.gz
	Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
	Package quadpack: missing distfile quadpack-20001130.tar.gz

Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden).  All existing
SHA1 digests retained for now as an audit trail.
   2013-01-24 02:51:13 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 1.0.15

Upstream changes:
2012-12-14 10:03  BenediktGraeler

	* pkg/demo/stkrige.R: - updated demo stkrige.R

2012-12-10 17:36  EdzerPebesma

	* pkg/tests/Examples/gstat-Ex.Rout.save: examples check

2012-12-10 17:30  EdzerPebesma

	* pkg/R/gstat.formula.R, pkg/R/gstat.formula.predict.R,
	  pkg/R/predict.gstat.R: added checking of factor levels, as lm()
	  does it.

2012-12-03 14:11  EdzerPebesma

	* pkg/DESCRIPTION: date

2012-11-28 20:04  BenediktGraeler

	* gstat_1.0-15.zip, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R,
	  pkg/inst/doc/st.Rnw, pkg/man/fit.StVariogram.Rd,
	  pkg/man/variogramSurface.Rd: - updated the vignette "st" to meet
	  the new implementations

2012-11-22 14:41  BenediktGraeler

	* gstat_1.0-15.zip, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R,
	  pkg/man/fit.StVariogram.Rd, pkg/man/variogramSurface.Rd: - added
	  a simplified sumMetric model having only a joint nugget
	  - added the metric model including a spatio-temporal anisotropy

2012-11-21 17:01  BenediktGraeler

	* ., gstat_1.0-15.zip, pkg/man/variogramSurface.Rd: - added
	  compiled windows version gstat_1.0-15.zip
	  - fixed example in variogramSurface.Rd

2012-11-21 16:14  BenediktGraeler

	* pkg/R/krige0.R, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R,
	  pkg/man/variogramSurface.Rd: - added man/variogramSurface.Rd
	  - fixed prodSum model in R/krige0.R and R/stVariogramModels.R
	  - updated demo/stkrige.R

2012-11-20 20:02  EdzerPebesma

	* pkg/NAMESPACE, pkg/R/krige.R, pkg/R/krige0.R, pkg/demo/00Index,
	  pkg/demo/stkrige.R, pkg/tests/Examples/gstat-Ex.Rout.save: added
	  stkrige demo; polished krige for ST method.

2012-11-20 17:53  EdzerPebesma

	* pkg/DESCRIPTION: update

2012-11-20 14:27  BenediktGraeler

	* pkg/man/fit.StVariogram.Rd: - fixed versioning issues

2012-11-20 14:26  BenediktGraeler

	* pkg/man/krige.Rd:

2012-11-20 11:07  BenediktGraeler

	* pkg/NAMESPACE, pkg/R/krige0.R, pkg/R/stVariogramModels.R,
	  pkg/man/fit.StVariogram.Rd, pkg/man/krige.Rd: - added functio
	  fit.StVariogram
	  - added sumMetric covariance model handling as well STSDF

2012-11-19 10:22  EdzerPebesma

	* pkg/NAMESPACE, pkg/R/krige0.R, pkg/R/variogramST.R,
	  pkg/man/krige.Rd: added krige method;
	  cleaned up NAMESPACE, changed call to zoo into as.zoo

2012-11-16 14:11  BenediktGraeler

	* pkg/R/krige0.R, pkg/R/stVariogramModels.R: - added automated
	  fitting of some StVariograms (separable, productSum, sumMetric)

2012-11-13 15:40  BenediktGraeler

	* pkg/R/krige0.R: added support for the product-sum model in
	  spatio-temporal kriging

2012-11-12 18:20  EdzerPebesma

	* pkg/DESCRIPTION, pkg/NAMESPACE, pkg/tests/Examples,
	  pkg/tests/Examples/gstat-Ex.Rout.save, pkg/tests/windst.R,
	  pkg/tests/windst.Rout.save: updated imports; Imports spacetime
	  (>=1.0-0); added examples check.

2012-11-11 15:04  EdzerPebesma

	* pkg/DESCRIPTION, pkg/NAMESPACE, pkg/R/fit.variogram.R,
	  pkg/R/fit.variogram.reml.R, pkg/R/gstat.debug.R,
	  pkg/R/load.variogram.model.R, pkg/R/predict.gstat.R, pkg/R/set.R,
	  pkg/R/variogram.default.R, pkg/R/variogramLine.R, pkg/R/vgm.R,
	  pkg/R/zzz.R, pkg/tests/blockkr.Rout.save,
	  pkg/tests/covtable.Rout.save, pkg/tests/cv.Rout.save,
	  pkg/tests/cv3d.Rout.save, pkg/tests/fit.Rout.save,
	  pkg/tests/krige0.Rout.save, pkg/tests/line.Rout.save,
	  pkg/tests/merge.Rout.save, pkg/tests/na.action.Rout.save,
	  pkg/tests/rings.Rout.save, pkg/tests/sim.Rout.save,
	  pkg/tests/unproj.Rout.save, pkg/tests/variogram.Rout.save,
	  pkg/tests/vdist.Rout.save, pkg/tests/windst.R,
	  pkg/tests/windst.Rout.save: moved zoo, xts and spacetime from
	  Depends: into Imports:
	  changed all .Call() calls to follow the new format without
	  quotes.

2012-11-10 22:56  EdzerPebesma

	* pkg/tests/unproj.Rout.save, pkg/tests/windst.Rout.save: updated
	  test outputs

2012-11-10 21:06  EdzerPebesma

	* pkg/DESCRIPTION: added rgeos in Suggests:

2012-11-10 16:13  EdzerPebesma

	* pkg/R/krige.R, pkg/man/fulmar.Rd, pkg/man/vv.Rd,
	  pkg/tests/krige0.Rout.save, pkg/tests/windst.Rout.save: updated
	  manual pages;
	  first attempts for S/T idw in krige.R (untested!)
	  updated test outputs

2012-11-08 20:42  EdzerPebesma

	* pkg/demo/fulmar.R, pkg/demo/gstat3D.R, pkg/demo/wind.R: updated /
	  corrected demos

2012-10-28 19:01  EdzerPebesma

	* pkg/src/s.c, pkg/tests/krige0.Rout.save,
	  pkg/tests/windst.Rout.save: s.c: removed #ifdef WIN32; tests:
	  update to 2.15.2

2012-10-28 18:41  EdzerPebesma

	* pkg/man/krige.Rd: added idw(formula, ST) method alias

2012-10-15 20:34  EdzerPebesma

	* pkg/data/vv.rda: new st variogram, with zero spatial lags

2012-10-15 20:01  EdzerPebesma

	* pkg/R/variogramST.R: computes pure time variogram, for zero space
	  lag.

2012-10-14 21:26  EdzerPebesma

	* pkg/R/krige.R, pkg/R/variogram.ST.R, pkg/R/variogramST.R,
	  pkg/man/variogram.Rd, pkg/src/s.c, pkg/src/sem.c: some work on
	  zero distance semivariances, variogramST still needs more work.

2012-10-06 16:09  EdzerPebesma

	* pkg/DESCRIPTION, pkg/R/fit.variogram.R, pkg/inst/ChangeLog,
	  pkg/tests/unproj.Rout.save, pkg/tests/windst.Rout.save: version
	  change; fit.variogram now fits Err models, too.

2012-09-12 14:21  EdzerPebesma

	* pkg/R/fit.variogram.R: for variogramCloud fitting, np shoud be 1

2012-09-12 14:20  EdzerPebesma

	* pkg/R/fit.variogram.R, pkg/R/fit.variogram.reml.R,
	  pkg/R/gstat.debug.R, pkg/R/krige0.R,
	  pkg/R/load.variogram.model.R, pkg/R/predict.gstat.R, pkg/R/set.R,
	  pkg/R/variogram.default.R, pkg/R/variogramLine.R, pkg/R/vgm.R,
	  pkg/R/zzz.R: added PACKAGE="gstat" argument to all .Call or .C
	  calls;
	  allow fit.variogram to fit to variogramCloud objects

2012-07-24 17:40  EdzerPebesma

	* pkg/tests/unproj.Rout.save: version update

2012-07-23 13:59  EdzerPebesma

	* pkg/demo/lhs.R: replaced non-ASCII character

2012-07-01 22:36  EdzerPebesma

	* makefile, pkg/DESCRIPTION, pkg/src/s.c: version update; #include
	  <S.h>; added -Wall to checking

2012-06-18 14:06  EdzerPebesma

	* pkg/R/show.vgms.R, pkg/src/chfactor.c, pkg/src/copy.c,
	  pkg/src/data.c, pkg/src/err.c, pkg/src/fit.c, pkg/src/getest.c,
	  pkg/src/hsehldr.c, pkg/src/init.c, pkg/src/ivecop.c,
	  pkg/src/lex.c, pkg/src/lufactor.c, pkg/src/machine.c,
	  pkg/src/mapio.c, pkg/src/matop.c, pkg/src/meminfo.c,
	  pkg/src/memory.c, pkg/src/msim.c, pkg/src/norm.c,
	  pkg/src/parse.c, pkg/src/polygon.c, pkg/src/predict.c,
	  pkg/src/pxop.c, pkg/src/qrfactor.c, pkg/src/sem.c,
	  pkg/src/solve.c, pkg/src/sparse.c, pkg/src/sprow.c,
	  pkg/src/submat.c, pkg/src/utils.c, pkg/src/vecop.c,
	  pkg/src/version.c, pkg/tests/unproj.Rout.save,
	  pkg/tests/windst.Rout.save: removed all warnings that would
	  result from using -Wall; updated two test outputs.

2012-06-16 20:52  EdzerPebesma

	* pkg/R/show.vgms.R, pkg/R/vgm.R: as.groups in show.vgms() now
	  works, too.

2012-06-16 16:38  EdzerPebesma

	* pkg/R/show.vgms.R, pkg/man/show.vgms.Rd: added as.groups
	  argument; typo

2012-06-16 15:37  EdzerPebesma

	* pkg/R/show.vgms.R, pkg/R/vgm.R, pkg/man/show.vgms.Rd: show.vgms
	  now accepts sill, range and nugget to be vectors of length > 1

2012-05-31 19:06  EdzerPebesma

	* makefile, pkg/DESCRIPTION, pkg/tests/unproj.R: version; took out
	  gstat.org

2012-05-01 17:32  EdzerPebesma

	* pkg/man/jura.Rd: url; more comments

2012-05-01 17:28  EdzerPebesma

	* pkg/man/jura.Rd: comments from David Rossiter

2012-04-30 20:33  EdzerPebesma

	* standalone/makefile, standalone/makefile.in,
	  standalone/src/version.h: removed configure target

2012-04-30 19:42  EdzerPebesma

	* pkg/man/oxford.Rd: reference to jpg corrected, noted by David
	  Rossiter

2012-04-30 12:54  EdzerPebesma

	* attic/S/makefile, makefile, pkg/DESCRIPTION, pkg/inst/ChangeLog,
	  pkg/src/block.c, pkg/src/block.h, pkg/src/chfactor.c,
	  pkg/src/config.hin, pkg/src/copy.c, pkg/src/debug.h,
	  pkg/src/defs.h, pkg/src/direct.c, pkg/src/err.c, pkg/src/fit.h,
	  pkg/src/gcdist.c, pkg/src/gcdist.h, pkg/src/getest.h,
	  pkg/src/gls.h, pkg/src/glvars.c, pkg/src/glvars.h,
	  pkg/src/hsehldr.c, pkg/src/lm.c, pkg/src/lufactor.c,
	  pkg/src/machine.c, pkg/src/machine.hin, pkg/src/mapio.c,
	  pkg/src/mapio.h, pkg/src/matop.c, pkg/src/matrix.h,
	  pkg/src/matrix2.h, pkg/src/meminfo.c, pkg/src/meminfo.h,
	  pkg/src/msim.c, pkg/src/msim.h, pkg/src/nsearch.c,
	  pkg/src/nsearch.h, pkg/src/parse.c, pkg/src/parse.h,
	  pkg/src/plot.h, pkg/src/polygon.c, pkg/src/polygon.h,
	  pkg/src/pqueue.c, pkg/src/pqueue.h, pkg/src/predict.h,
	  pkg/src/random.h, pkg/src/read.h, pkg/src/reml.c, pkg/src/reml.h,
	  pkg/src/report.h, pkg/src/sem.c, pkg/src/sim.h, pkg/src/solve.c,
	  pkg/src/sparse.h, pkg/src/stat.c, pkg/src/stat.h,
	  pkg/src/userio.c, pkg/src/userio.h, pkg/src/utils.c,
	  pkg/src/utils.h, pkg/src/vario.h, pkg/src/vario_fn.c,
	  pkg/src/vario_fn.h, pkg/src/vario_io.c, pkg/src/vario_io.h,
	  pkg/src/version.h, pkg/tests/cv.Rout.save,
	  pkg/tests/cv3d.Rout.save, standalone/meschach/machine.h,
	  standalone/src/s.h, standalone/src/version.h: added missing src
	  files; increased version number.

2012-04-30 11:46  EdzerPebesma

	* COPYING, ChangeLog, ChangeLog.cvs, README, S, TODO, aclocal.m4,
	  attic/S, attic/S/R/gstat/src/config.w32,
	  attic/S/R/gstat/src/machine.w32, attic/S/TODO, configure,
	  configure.in, install-sh, makefile, makefile.in,
	  pkg/src/config.w32, pkg/src/machine.w32, standalone/COPYING,
	  standalone/ChangeLog, standalone/ChangeLog.cvs,
	  standalone/README, standalone/aclocal.m4, standalone/configure,
	  standalone/configure.in, standalone/install-sh,
	  standalone/makefile, standalone/makefile.in: further cleanup and
	  code move

2012-04-30 11:31  EdzerPebesma

	* S/R/gstat/CHANGES, S/R/gstat/DESCRIPTION, S/R/gstat/INDEX,
	  S/R/gstat/LICENCE, S/R/gstat/NAMESPACE, S/R/gstat/aclocal.m4,
	  S/R/gstat/cleanup, S/R/gstat/configure, S/R/gstat/configure.in,
	  S/R/gstat/configure.win, S/R/gstat/inst, S/R/gstat/makefile.in,
	  S/data, S/demo, S/man, S/src, S/tests, cmd, include, lib,
	  meschach, pkg, pkg/CHANGES, pkg/DESCRIPTION, pkg/INDEX,
	  pkg/LICENCE, pkg/NAMESPACE, pkg/R, pkg/R/fit.lmc.R,
	  pkg/R/fit.lmc.q, pkg/R/fit.variogram.R,
	  pkg/R/fit.variogram.gls.R, pkg/R/fit.variogram.gls.q,
	  pkg/R/fit.variogram.q, pkg/R/fit.variogram.reml.R,
	  pkg/R/fit.variogram.reml.q, pkg/R/get.contr.R, pkg/R/get.contr.q,
	  pkg/R/gstat.R, pkg/R/gstat.cv.R, pkg/R/gstat.cv.q,
	  pkg/R/gstat.debug.R, pkg/R/gstat.debug.q, pkg/R/gstat.formula.R,
	  pkg/R/gstat.formula.predict.R, pkg/R/gstat.formula.predict.q,
	  pkg/R/gstat.formula.q, pkg/R/gstat.q, pkg/R/hscat.R,
	  pkg/R/hscat.q, pkg/R/image.data.frame.R,
	  pkg/R/image.data.frame.q, pkg/R/krige.R, pkg/R/krige.cv.R,
	  pkg/R/krige.cv.q, pkg/R/krige.q, pkg/R/krige0.R, pkg/R/krige0.q,
	  pkg/R/krigeTg.R, pkg/R/krigeTg.q, pkg/R/load.variogram.model.R,
	  pkg/R/load.variogram.model.q, pkg/R/map.to.lev.R,
	  pkg/R/map.to.lev.q, pkg/R/ossfim.R, pkg/R/ossfim.q,
	  pkg/R/panel.pointPairs.R, pkg/R/panel.pointPairs.q,
	  pkg/R/plot.gstatVariogram.R, pkg/R/plot.gstatVariogram.q,
	  pkg/R/plot.pointPairs.R, pkg/R/plot.pointPairs.q,
	  pkg/R/plot.variogramCloud.R, pkg/R/plot.variogramCloud.q,
	  pkg/R/predict.gstat.R, pkg/R/predict.gstat.q,
	  pkg/R/print.gstat.R, pkg/R/print.gstat.q,
	  pkg/R/print.variogram.R, pkg/R/print.variogram.q,
	  pkg/R/print.variogramCloud.R, pkg/R/print.variogramCloud.q,
	  pkg/R/print.variogramModel.R, pkg/R/print.variogramModel.q,
	  pkg/R/set.R, pkg/R/set.q, pkg/R/show.vgms.R, pkg/R/show.vgms.q,
	  pkg/R/smenu.R, pkg/R/spplot.R, pkg/R/spplot.q,
	  pkg/R/variogram.ST.R, pkg/R/variogram.default.R,
	  pkg/R/variogram.default.q, pkg/R/variogram.formula.R,
	  pkg/R/variogram.formula.q, pkg/R/variogram.gstat.R,
	  pkg/R/variogram.gstat.q, pkg/R/variogramLine.R,
	  pkg/R/variogramLine.q, pkg/R/variogramST.R, pkg/R/variogramST.q,
	  pkg/R/vgm.R, pkg/R/vgm.panel.R, pkg/R/vgm.panel.q, pkg/R/vgm.q,
	  pkg/R/xyz2img.R, pkg/R/xyz2img.q, pkg/R/zzz.R, pkg/R/zzz.q,
	  pkg/aclocal.m4, pkg/cleanup, pkg/configure, pkg/configure.in,
	  pkg/configure.win, pkg/data, pkg/demo, pkg/inst, pkg/makefile.in,
	  pkg/man, pkg/src, pkg/src/data.c, pkg/src/data.h,
	  pkg/src/defaults.h, pkg/src/direct.h, pkg/src/err.h,
	  pkg/src/ext_dbase.h, pkg/src/fit.c, pkg/src/getest.c,
	  pkg/src/gls.c, pkg/src/init.c, pkg/src/ivecop.c, pkg/src/lex.c,
	  pkg/src/lex.h, pkg/src/lex.l, pkg/src/lm.h, pkg/src/memory.c,
	  pkg/src/meschach, pkg/src/meschach/dmacheps.c,
	  pkg/src/meschach/fmacheps.c, pkg/src/meschach/maxint.c,
	  pkg/src/norm.c, pkg/src/predict.c, pkg/src/pxop.c,
	  pkg/src/qrfactor.c, pkg/src/random.c, pkg/src/read.c,
	  pkg/src/s.c, pkg/src/s.h, pkg/src/select.c, pkg/src/select.h,
	  pkg/src/sem.h, pkg/src/sim.c, pkg/src/sparse.c,
	  pkg/src/sparse2.h, pkg/src/sprow.c, pkg/src/submat.c,
	  pkg/src/vario.c, pkg/src/vecop.c, pkg/src/version.c,
	  pkg/src/zmatrix.h, pkg/src/zmatrix2.h, pkg/tests, src,
	  standalone, standalone/cmd, standalone/include, standalone/lib,
	  standalone/meschach, standalone/src, standalone/src/version.h:
	  code reorganization; moving R package to pkg, standalone stuff to
	  standalone

2012-04-09 17:22  EdzerPebesma

	* S/R/gstat/inst/ChangeLog, S/makefile: update

2012-03-25 14:46  EdzerPebesma

	* S/R/gstat/DESCRIPTION: added dependency to zoo and xts

2012-01-20 08:04  EdzerPebesma

	* S/src/plot.variogramCloud.q: r-sig-geo question from Tom
	  Gottfried, 11/03/2011

2012-01-19 21:12  EdzerPebesma

	* S/R/gstat/inst/ChangeLog, S/src/plot.variogramCloud.q, src/s.c:
	  minor memory leak fix.

2011-12-19 14:33  EdzerPebesma

	* S/man/variogram.Rd: added note that variogram.default may not be
	  a very good entry point
	  (likely lacking critical documentation)

2011-12-12 17:06  EdzerPebesma

	* S/src/krige0.q, S/tests/blockkr.Rout.save,
	  S/tests/covtable.Rout.save, S/tests/cv.Rout.save,
	  S/tests/cv3d.Rout.save, S/tests/fit.Rout.save,
	  S/tests/krige0.Rout.save, S/tests/line.Rout.save,
	  S/tests/merge.Rout.save, S/tests/na.action.Rout.save,
	  S/tests/rings.Rout.save, S/tests/sim.Rout.save,
	  S/tests/unproj.Rout.save, S/tests/variogram.Rout.save,
	  S/tests/vdist.Rout.save, S/tests/windst.R,
	  S/tests/windst.Rout.save: updated tests output (novel zoo
	  warning)
   2012-04-15 19:37:43 by Brook Milligan | Files touched by this commit (3) | Package updated
Log message:
Update to gstat v1.0-10, add LICENSE, and regularize package files.
   2009-12-11 20:30:46 by Adam Ciarcinski | Files touched by this commit (2) | Package updated
Log message:
Update to the latest version of the module along with R update
   2008-10-14 10:24:23 by Mark Davies | Files touched by this commit (2) | Package updated
Log message:
Update R-gstat to 0.9.51

many bug fixes
   2007-10-25 18:59:59 by Johnny C. Lam | Files touched by this commit (980)
Log message:
Remove empty PLISTs from pkgsrc since revision 1.33 of plist/plist.mk
can handle packages having no PLIST files.