./biology/ad2vcf, Add allelic depth info from a SAM stream to a VCF file

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Branch: CURRENT, Version: 0.1.6.20, Package name: ad2vcf-0.1.6.20, Maintainer: bacon

ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file.

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Version history: (Expand)

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   2024-11-29 13:54:12 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/ad2vcf: Update to 0.1.6.20

Rerun make depend upstream to drop system headers
Unbreak build with non-default MANDIR
   2024-05-19 14:56:54 by Jason Bacon | Files touched by this commit (4) 
Log message:
biology/ad2vcf: Update to 0.1.6.19

Use xt_fopen() to support all common compression tools
A few other minor improvements
   2023-06-22 13:26:26 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/ad2vcf: Fix typo in DESCR
   2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) 
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages
   2022-06-11 21:48:32 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/ad2vcf: Update to 0.1.6

Updates for bl_sam_t and bl_vcf_t API streamlining
Changes: https://github.com/auerlab/ad2vcf/releases
   2022-03-15 22:08:32 by Jason Bacon | Files touched by this commit (3) | Package updated
Log message:
biology/ad2vcf: Update to 0.1.5

Minor update for bioloibc 0.2.2 API changes
   2021-12-14 20:02:21 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/ad2vcf: Update to 0.1.4

Updates for evolving libxtend and biolibc APIs
Add --version flag
Filter out unused SAM fields on input
Numerous other minor fixes and enhancements

Changes: https://github.com/auerlab/ad2vcf/releases/tag/0.1.4
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes