./biology/biolibc-tools, High-performance bioinformatics tools based on biolibc

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Branch: CURRENT, Version: 0.1.3, Package name: biolibc-tools-0.1.3, Maintainer: bacon

Biolibc-tools is a collection of simple, fast, and memory-efficient
programs for processing biological data. These programs built on
biolibc are not complex enough to warrant separate projects.


Master sites:

Filesize: 27.085 KB

Version history: (Expand)


CVS history: (Expand)


   2022-06-11 21:44:46 by Jason Bacon | Files touched by this commit (3)
Log message:
biology/biolibc-tools: Update to 0.1.3

Add vcf-downsample subcommand
Improvements to build system
extract-seq: Recurse to output subfeatures
Numerous other minor enhancements and fixes
Changes: https://github.com/auerlab/biolibc-tools/releases
   2022-03-15 22:10:59 by Jason Bacon | Files touched by this commit (3) | Package updated
Log message:
biology/biolibc-tools: Update to 0.1.2

New fastx-stats and ensembl2gene subcommands
Minor updates for biolibc 0.2.2 API changes
Minor bug fixes and ennancements
   2021-12-14 20:05:39 by Jason Bacon | Files touched by this commit (3)
Log message:
biology/biolibc-tools: Update to 0.1.1

Make all programs subcommands of "blt"
Several new commands
Updates for evolving libxtend and biolibc APIs
Add --version flag
Numerous minor fixes and enhancements

Changes: https://github.com/auerlab/biolibc-tools/releases/tag/0.1.1
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73)
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73)
Log message:
biology: Remove SHA1 hashes for distfiles