./biology/biolibc-tools, High-performance bioinformatics tools based on biolibc

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Branch: CURRENT, Version: 0.1.4.13, Package name: biolibc-tools-0.1.4.13, Maintainer: bacon

Biolibc-tools is a collection of simple, fast, and memory-efficient
programs for processing biological data. These programs built on
biolibc are not complex enough to warrant separate projects.

Master sites:

Version history: (Expand)

CVS history: (Expand)


   2023-10-29 23:58:03 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/biolibc-tools: Update to 0.1.4.13

Updates for new libxtend API
   2023-08-12 16:51:02 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/biolibc-tools: Update to 0.1.4.9

Updates for biolibc GFF3 API changes
   2023-06-14 20:43:34 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/biolibc-tools: Update to 0.1.4.6

Improvements to deromanize
Updates for libxtend API changes
   2023-05-21 14:20:46 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/biolibc-tools: Update to 0.1.4.3

deromanize: Take optional input filename, improve robustness
   2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) 
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages
   2022-12-14 01:23:19 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/biolibc-tools: Update to 0.1.4.1

deromanize:

Check for NULL field to prevent crash in some situations
Take optional input file as second argument
   2022-12-13 01:53:43 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/biolibc-tools: Update to 0.1.4

Add deromanize subcommand to convert Roman numeral chromosome IDs
fastx-stats: Report standard deviation for read length

Changes:    https://github.com/auerlab/biolibc-tools/releases
   2022-06-11 21:44:46 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/biolibc-tools: Update to 0.1.3

Add vcf-downsample subcommand
Improvements to build system
extract-seq: Recurse to output subfeatures
Numerous other minor enhancements and fixes
Changes: https://github.com/auerlab/biolibc-tools/releases