./biology/bowtie2, Ultrafast, memory-efficient short read aligner

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]

Branch: CURRENT, Version: 2.5.2, Package name: bowtie2-2.5.2, Maintainer: bacon

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns
short DNA sequences (reads) to the human genome at a rate of over 25
million 35-bp reads per hour.

Master sites:

Filesize: 10383.444 KB

Version history: (Expand)

CVS history: (Expand)


   2023-10-18 15:34:23 by Jason Bacon | Files touched by this commit (6) 
Log message:
biology/bowtie2: Update to 2.5.2

Numerous bug fixes and enhancements since 2.4.4
Changes: https://github.com/BenLangmead/bowtie2/releases
   2023-08-14 07:25:36 by Thomas Klausner | Files touched by this commit (1247) 
Log message:
*: recursive bump for Python 3.11 as new default
   2023-05-18 16:16:27 by Jason Bacon | Files touched by this commit (5) 
Log message:
biology/bowtie2: Add support for aarch64 via devel/simde

May also work on other 64-bit architectures, but untested
   2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) 
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages
   2022-06-30 13:19:02 by Nia Alarie | Files touched by this commit (524) 
Log message:
*: Revbump packages that use Python at runtime without a PKGNAME prefix
   2022-06-28 13:38:00 by Thomas Klausner | Files touched by this commit (3952) 
Log message:
*: recursive bump for perl 5.36
   2021-12-17 16:25:20 by Jason Bacon | Files touched by this commit (5) 
Log message:
biology/bowtie2: Update to 2.4.4

Replaced TBB with C++ threads
Support for Apple M1
Several other fixes and enhancements

Changes: https://github.com/BenLangmead/bowtie2/tags
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes