./biology/canu, Single molecule sequence assembler for genomes large and small

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Branch: CURRENT, Version: 1.8nb11, Package name: canu-1.8nb11, Maintainer: bacon

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

Detect overlaps in high-noise sequences using MHAP

Generate corrected sequence consensus

Trim corrected sequences

Assemble trimmed corrected sequences


Required to run:
[graphics/gnuplot] [lang/perl5] [devel/boost-libs]

Required to build:
[devel/boost-headers] [pkgtools/cwrappers]

Master sites:

Filesize: 2407.533 KB

Version history: (Expand)

CVS history: (Expand)


   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Remove SHA1 hashes for distfiles
   2021-09-29 21:01:31 by Adam Ciarcinski | Files touched by this commit (872) 
Log message:
revbump for boost-libs
   2021-05-24 21:56:06 by Thomas Klausner | Files touched by this commit (3575) 
Log message:
*: recursive bump for perl 5.34
   2021-04-21 15:25:34 by Adam Ciarcinski | Files touched by this commit (864) 
Log message:
revbump for boost-libs
   2021-01-01 09:24:59 by Ryo ONODERA | Files touched by this commit (266) 
Log message:
*: Recursive revbump from boost-1.75.0
   2020-08-31 20:13:29 by Thomas Klausner | Files touched by this commit (3631) 
Log message:
*: bump PKGREVISION for perl-5.32.
   2020-05-16 21:50:21 by Roland Illig | Files touched by this commit (2) 
Log message:
biology/canu: fix build on NetBSD-8.0-x86_64