./biology/cdhit, Clustering and comparing protein or nucleotide sequences

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Branch: CURRENT, Version: 4.6.4nb4, Package name: cdhit-4.6.4nb4, Maintainer: bacon

CD-HIT is a very widely used program for clustering and comparing protein or
nucleotide sequences.


Required to run:
[shells/bash]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: 3606a8200e62ac60c9dd782a57bec426256e6fa8
RMD160: a94a29103393dded87000173d8eb4ec1a1e0614f
Filesize: 1121.51 KB

Version history: (Expand)

CVS history: (Expand)


   2020-08-31 20:13:29 by Thomas Klausner | Files touched by this commit (3631) | Package updated
Log message:
*: bump PKGREVISION for perl-5.32.
   2019-08-11 15:25:21 by Thomas Klausner | Files touched by this commit (3557) | Package updated
Log message:
Bump PKGREVISIONs for perl 5.30.0
   2019-01-13 23:06:42 by Jason Bacon | Files touched by this commit (6) 
Log message:
Multiple packages: Replace obsolete maintainer email

jwbacon@tds.net ==> bacon@NetBSD.org
   2018-08-22 11:48:07 by Thomas Klausner | Files touched by this commit (3558) 
Log message:
Recursive bump for perl5-5.28.0
   2018-07-04 15:40:45 by Jonathan Perkin | Files touched by this commit (423) 
Log message:
*: Move SUBST_STAGE from post-patch to pre-configure

Performing substitutions during post-patch breaks tools such as mkpatches,
making it very difficult to regenerate correct patches after making changes,
and often leading to substituted string replacements being committed.
   2016-07-09 08:39:18 by Thomas Klausner | Files touched by this commit (1068) | Package updated
Log message:
Bump PKGREVISION for perl-5.24.0 for everything mentioning perl.
   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38) 
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.
   2015-10-12 18:48:08 by Leonardo Taccari | Files touched by this commit (4) 
Log message:
Import biology/cdhit as cdhit-4.6.4.
Packaged in pkgsrc-wip by Jason Bacon.

CD-HIT is a very widely used program for clustering and comparing protein or
nucleotide sequences.