./biology/chip-seq, Core tools needed for ChIP-Seq analysis

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Branch: CURRENT, Version: 1.2, Package name: chip-seq-1.2, Maintainer: bacon

The chip-seq meta-package provides the core tools needed for
performing a typical ChIP-Seq differential accessibility analysis,
including adapter trimming, quality control, alignment, peak calling,
and identification of differentially accessible peaks. Researchers
may want additional tools for data manipulation, gene ontology,
etc.

Version history: (Expand)

CVS history: (Expand)


   2023-12-23 17:35:39 by Jason Bacon | Files touched by this commit (2) 
Log message:
biology/chip-seq: Update to 1.2

Update python versions to match py-macs2
Add sra-tools and a few commonly used archivers to metapkg
   2023-11-06 00:48:31 by Thomas Klausner | Files touched by this commit (3) 
Log message:
py-macs2: not for Python 3.12
   2023-08-14 07:25:36 by Thomas Klausner | Files touched by this commit (1247) 
Log message:
*: recursive bump for Python 3.11 as new default
   2023-08-02 01:20:57 by Thomas Klausner | Files touched by this commit (158) 
Log message:
*: remove more references to Python 3.7
   2023-07-01 10:37:47 by Thomas Klausner | Files touched by this commit (105) | Package updated
Log message:
*: restrict py-numpy users to 3.9+ in preparation for update
   2023-06-14 23:28:31 by Jason Bacon | Files touched by this commit (2) 
Log message:
biology/chip-seq: Core tools needed for ChIP-Seq analysis

The chip-seq meta-package provides the core tools needed for performing
a typical ChIP-Seq differential accessibility analysis, including
adapter trimming, quality control, alignment, peak calling, and
identification of differentially accessible peaks.  Researchers may
want additional tools for data manipulation, gene ontology, etc.

Presently identical to biology/atac-seq, but may diverge in the future.