./biology/fasda, Fast and simple differential analysis

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Branch: CURRENT, Version: 0.1.5, Package name: fasda-0.1.5, Maintainer: bacon

FASDA aims to provide a fast and simple differential analysis tool
that just works and does not require any knowledge beyond basic Unix
command-line skills. The code is written entirely in C to maximize
efficiency and portability, and to provide a simple command-line user
interface.

Master sites:

Filesize: 76.082 KB

Version history: (Expand)

CVS history: (Expand)


   2023-10-28 22:33:41 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/fasda: Update to 0.1.5

abundance:
    Update stringtie command to also produce gene-level abundances
    Output 0 for effective length for now to clearly indicate that it's invalid
normalize: Add --debug option
    Updates for latest libxtend API
Test -> Yeast-test
Add Mouse-test suite with multiple mouse data options
Streamline test scripts

Changes: https://github.com/auerlab/fasda/releases
   2023-08-12 17:02:00 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/fasda: Update to 0.1.4

Add --debug
Replace --map-gene with --feature-type for more flexibility
Use extended REs for gff3 feature selection
(default = RNA$|transcript$|gene_segment$, same as transcript in GTF)
Add --output-dir
Support |-separated ID aliases (report last alias)
Support outsourcing abundance calculation (default = stringtie)
Several bug fixes and minor enhancements

Changes: https://github.com/auerlab/fasda/releases
   2023-06-14 20:45:12 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/fasda: Update to 0.1.3

Improvements to test scripts and results analysis scripts
Updates for libxtend API changes
Code clean up
Changes: outpaddling/libxtend/releases
   2023-05-24 18:05:38 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/fasda: Update to 0.1.2.30

Portability fixes and output improvements
   2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) 
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages
   2022-12-12 19:28:42 by Jason Bacon | Files touched by this commit (4) 
Log message:
biology/fasda: Fast and simple differential analysis

FASDA aims to provide a fast and simple differential analysis tool
that just works and does not require any knowledge beyond basic Unix
command-line skills. The code is written entirely in C to maximize
efficiency and portability, and to provide a simple command-line user
interface.