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biology/gffread,
GFF/GTF format conversions, filtering, FASTA extraction, etc
Branch: CURRENT,
Version: 0.12.7,
Package name: gffread-0.12.7,
Maintainer: baconGFF/GTF utility providing format conversions, filtering, FASTA sequence
extraction and more. The program gffread can be used to validate,
filter, convert and perform various other operations on GFF files.
Because the program shares the same GFF parser code with Cufflinks,
Stringtie, and gffcompare, it could be used to verify that a GFF file
from a certain annotation source is correctly "understood" by these
programs.
Master sites:
Filesize: 394.271 KB
Version history: (Expand)
- (2022-11-07) Package added to pkgsrc.se, version gffread-0.12.7 (created)
CVS history: (Expand)
2022-11-07 00:01:18 by Jason Bacon | Files touched by this commit (5) |
Log message:
biology/gffread: GFF/GTF format conversions, filtering, etc
GFF/GTF utility providing format conversions, filtering, FASTA sequence
extraction and more. The program gffread can be used to validate,
filter, convert and perform various other operations on GFF files.
Because the program shares the same GFF parser code with Cufflinks,
Stringtie, and gffcompare, it could be used to verify that a GFF file
from a certain annotation source is correctly "understood" by these
programs.
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