./biology/hmmer, Implementation of profile HMM software for protein sequence analysis

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Branch: CURRENT, Version: 3.0nb1, Package name: hmmer-3.0nb1, Maintainer: pkgsrc-users

HMMER is an implementation of profile HMM methods for sensitive database
searches using multiple sequence alignments as queries. HMMER takes
multiple sequence alignment as input and builds statistical model
called "Hidden Markov Model" which can be used as a query into a
sequence database to find and/or align additional homologues of the
sequence family.

Master sites:

Filesize: 3859.39 KB

Version history: (Expand)

CVS history: (Expand)


   2024-04-22 15:44:10 by Havard Eidnes | Files touched by this commit (4) 
Log message:
biology/hmmer: fix build on NetBSD/powerpc.

When building with -maltivec (as we do here, when on NetBSD/powerpc),
__APPLE_ALTIVEC__ gets defined, but you still need to include
<altivec.h>, at least on NetBSD.
   2023-12-29 01:38:59 by Zafer Aydogan | Files touched by this commit (1) | Package updated
Log message:
update homepage and master site
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Remove SHA1 hashes for distfiles
   2017-01-19 19:52:30 by Alistair G. Crooks | Files touched by this commit (352) 
Log message:
Convert all occurrences (353 by my count) of

	MASTER_SITES= 	site1 \
			site2

style continuation lines to be simple repeated

	MASTER_SITES+= site1
	MASTER_SITES+= site2

lines. As previewed on tech-pkg. With thanks to rillig for fixing pkglint
accordingly.
   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38) 
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.
   2014-10-09 16:07:17 by Thomas Klausner | Files touched by this commit (1163) 
Log message:
Remove pkgviews: don't set PKG_INSTALLATION_TYPES in Makefiles.
   2013-07-21 17:58:51 by Wen Heping | Files touched by this commit (4) 
Log message:
Update to 3.0
Add LICENSE
Add more distfile mirrors

Upstream changelog please visit:
http://selab.janelia.org/software/hmmer3/3.0/RELEASE-NOTES