./biology/libpll, High-performance software library for phylogenetic analysis

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Branch: CURRENT, Version: 0.3.2nb1, Package name: libpll-0.3.2nb1, Maintainer: thomas.orgis

The aim of this project is to implement a versatile high-performance
software library for phylogenetic analysis. The library should serve
as a lower-level interface of PLL (Flouri et al. 2015) and should
have the following properties:

open source code with an appropriate open source license.
64-bit multi-threaded design that handles very large datasets.
easy to use and well-documented.
SIMD implementations of time-consuming parts.
as fast or faster likelihood computations than RAxML (Stamatakis 2014).
fast implementation of the site repeats algorithm (Kobert 2017).
functions for tree visualization.
bindings for Python.
generic and clean design.
Linux, Mac, and Microsoft Windows compatibility.

Master sites:

Filesize: 585.887 KB

Version history: (Expand)

CVS history: (Expand)


   2024-01-24 18:35:53 by Dr. Thomas Orgis | Files touched by this commit (1) 
Log message:
biology/libpll: only works on Linux
   2024-01-24 17:37:10 by Thomas Klausner | Files touched by this commit (1) 
Log message:
libpll: fix pkglint
   2024-01-24 17:36:57 by Thomas Klausner | Files touched by this commit (2) 
Log message:
libppl: fix unportable test operator
   2024-01-24 17:36:38 by Thomas Klausner | Files touched by this commit (1) 
Log message:
libppl: fix buildlink3 file
   2024-01-17 16:53:51 by Dr. Thomas Orgis | Files touched by this commit (2) 
Log message:
libpll: Do not convert man page to PDF

This depends on locating ps2pdf and doesn't seem that useful. If you
want the man page, any man page, as PDF, you can run man -t | ps2pdf
yourself.
   2023-12-18 02:41:49 by Dr. Thomas Orgis | Files touched by this commit (1) 
Log message:
biology/libpll: add bl3
   2023-12-18 02:39:13 by Dr. Thomas Orgis | Files touched by this commit (6) 
Log message:
biology/libpll: added package for PLL phylogenetic analysis

The aim of this project is to implement a versatile high-performance
software library for phylogenetic analysis. The library should serve
as a lower-level interface of PLL (Flouri et al. 2015) and should
have the following properties:

    open source code with an appropriate open source license.
    64-bit multi-threaded design that handles very large datasets.
    easy to use and well-documented.
    SIMD implementations of time-consuming parts.
    as fast or faster likelihood computations than RAxML (Stamatakis 2014).
    fast implementation of the site repeats algorithm (Kobert 2017).
    functions for tree visualization.
    bindings for Python.
    generic and clean design.
    Linux, Mac, and Microsoft Windows compatibility.