./biology/py-macs2, Algorithm for identifying transcription factor binding sites

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Branch: CURRENT, Version: 2.2.9.1, Package name: py312-macs2-2.2.9.1, Maintainer: bacon

MACS is a tool for chromatin immunoprecipitation (ChIP) sequence
analysis. MACS empirically models the length of the sequenced ChIP
fragments, which tend to be shorter than sonication or library
construction size estimates, and uses it to improve the spatial
resolution of predicted binding sites.

Master sites:

Filesize: 129989.331 KB

Version history: (Expand)

CVS history: (Expand)


   2023-12-25 11:21:17 by Thomas Klausner | Files touched by this commit (1) 
Log message:
py-macs2: add missing tool dependencies
   2023-12-23 17:15:02 by Jason Bacon | Files touched by this commit (6) | Package updated
Log message:
biology/py-macs2: Update to 2.2.9.1

Minor updates from 2.2.8
Add hacks for cython 3 to pkgsrc patches
This is likely the final release of MACS2
MACS3 package is forthcoming
Changes: https://github.com/macs3-project/MACS/releases
   2023-11-06 00:48:31 by Thomas Klausner | Files touched by this commit (3) 
Log message:
py-macs2: not for Python 3.12
   2023-08-02 01:20:57 by Thomas Klausner | Files touched by this commit (158) 
Log message:
*: remove more references to Python 3.7
   2023-07-01 10:37:47 by Thomas Klausner | Files touched by this commit (105) | Package updated
Log message:
*: restrict py-numpy users to 3.9+ in preparation for update
   2023-05-18 16:01:58 by Jason Bacon | Files touched by this commit (4) 
Log message:
biology/py-macs2: Update to 2.2.8

Adds support for python 3.11

Changes: https://github.com/macs3-project/MACS/releases
   2023-02-10 15:19:46 by Thomas Klausner | Files touched by this commit (2) 
Log message:
py-macs2: fix dependency pattern in setup.py

Fixes configure
   2023-01-29 01:33:04 by Thomas Klausner | Files touched by this commit (2) 
Log message:
py-macs2: does not support python 2.x