./biology/rna-seq, Core tools needed for RNA-Seq analysis

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Branch: CURRENT, Version: 1.3.0, Package name: rna-seq-1.3.0, Maintainer: bacon

The rna-seq meta-package provides the core tools needed for performing
a typical RNA-Seq differential gene expression analysis, including
adapter trimming, quality control, alignment, and identification of
differentially expressed genes. Researchers may want additional tools
for data manipulation, gene ontology, etc.

Version history: (Expand)

CVS history: (Expand)


   2024-04-11 16:46:53 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/rna-seq: Update to 1.3.0

Remove multiqc dep, responsible for 117 dependencies, including
gcc, llvm, and rust.
Add sra-tools, lz4, xz, and zstd
   2023-08-14 07:25:36 by Thomas Klausner | Files touched by this commit (1247) 
Log message:
*: recursive bump for Python 3.11 as new default
   2023-07-31 16:38:36 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/rna-seq: Add rna-star dep to metapackage
   2023-07-28 18:43:41 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/rna-seq: Add curl to metaport deps

Standardizing on a download tool simplifies pipelines
   2023-07-23 04:10:54 by Thomas Klausner | Files touched by this commit (1) 
Log message:
rna-seq: not for Python 27, 38

because py-multiqc isn't
   2023-07-22 15:23:46 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/rna-seq: Update to 1.2

Add py-multiqc to metapackage
   2023-01-23 22:41:53 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/rna-seq: Add www/webbrowser dep to metapackage

Used by test scripts to display FastQC reports
   2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) 
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages