./biology/rna-star, Spliced Transcripts Alignment to a Reference

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]

Branch: CURRENT, Version: 2.7.10b, Package name: rna-star-2.7.10b, Maintainer: bacon

STAR (Spliced Transcripts Alignment to a Reference) aims to achieve
accurate alignment of high-throughput RNA-seq data. STAR is based on
a previously undescribed RNA-seq alignment algorithm that uses
sequential maximum mappable seed search in uncompressed suffix arrays
followed by seed clustering and stitching procedure. STAR outperforms
other aligners by a factor of >50 in mapping speed, aligning to the
human genome 550 million 2 x 76 bp paired-end reads per hour on a modest
12-core server, while at the same time improving alignment sensitivity
and precision

Master sites:

Filesize: 12152.054 KB

Version history: (Expand)

CVS history: (Expand)


   2023-08-29 23:49:57 by Jason Bacon | Files touched by this commit (9) 
Log message:
biology/rna-star: Fix build on Darwin 21.6.0 x86

Remove extern "C" in file build with c++
   2023-07-31 16:34:18 by Jason Bacon | Files touched by this commit (9) 
Log message:
biology/rna-star: Spliced Transcripts Align to a Ref

STAR (Spliced Transcripts Alignment to a Reference) aims to achieve
accurate alignment of high-throughput RNA-seq data.  STAR is based on
a previously undescribed RNA-seq alignment algorithm that uses
sequential maximum mappable seed search in uncompressed suffix arrays
followed by seed clustering and stitching procedure. STAR outperforms
other aligners by a factor of >50 in mapping speed, aligning to the
human genome 550 million 2 x 76 bp paired-end reads per hour on a modest
12-core server, while at the same time improving alignment sensitivity
and precision.