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biology/sra-tools,
NCBIs toolkit for handling data in INSDC Sequence Read Archives
Branch: CURRENT,
Version: 3.0.6nb2,
Package name: sra-tools-3.0.6nb2,
Maintainer: baconSRA tools is a toolkit for using data in the INSDC Sequence Read
Archives. SRAs operated by the International Nucleotide Sequence
Database Collaboration house sequence reads and alignments generated
by "next-gen" sequencers. SRA tools allows conversion of .sra
files, which INSDC SRAs maintain, from/to other formats that the
'next-gen' sequencers generate including:
* csfasta/csqual (ABI SOLiD)
* fastq (and fasta for writing)
* hdf5 (PacBio, reading only)
* qseq (older Illumina)
* sam (writing only) / bam (reading only)
* sff
The toolkit uses the NCBI-VDB back-end enabling seamless access to
remote SRA data and local SRA files.
Master sites:
Version history: (Expand)
- (2023-11-24) Updated to version: sra-tools-3.0.6nb2
- (2023-11-08) Updated to version: sra-tools-3.0.6nb1
- (2023-08-29) Package added to pkgsrc.se, version sra-tools-3.0.6 (created)
CVS history: (Expand)
2023-11-24 17:37:29 by Thomas Klausner | Files touched by this commit (1) |
Log message:
sra-tools: add missing Python dependency
Bump PKGREVISION
|
2023-11-08 14:21:43 by Thomas Klausner | Files touched by this commit (2377) |
Log message:
*: recursive bump for icu 74.1
|
2023-08-29 02:00:25 by Jason Bacon | Files touched by this commit (8) |
Log message:
biology/sra-tools: NCBI's toolkit for SRA
SRA tools is a toolkit for using data in the INSDC Sequence Read
Archives. SRAs operated by the International Nucleotide Sequence
Database Collaboration house sequence reads and alignments generated
by "next-gen" sequencers. SRA tools allows conversion of .sra
files, which INSDC SRAs maintain, from/to other formats that the
'next-gen' sequencers generate including:
* csfasta/csqual (ABI SOLiD)
* fastq (and fasta for writing)
* hdf5 (PacBio, reading only)
* qseq (older Illumina)
* sam (writing only) / bam (reading only)
* sff
The toolkit uses the NCBI-VDB back-end enabling seamless access to
remote SRA data and local SRA files.
|