./biology/vsearch, Versatile open-source tool for metagenomics

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]

Branch: CURRENT, Version: 2.29.0, Package name: vsearch-2.29.0, Maintainer: bacon

VSEARCH supports de novo and reference based chimera detection,
clustering, full-length and prefix dereplication, rereplication,
reverse complementation, masking, all-vs-all pairwise global
alignment, exact and global alignment searching, shuffling,
subsampling and sorting. It also supports FASTQ file analysis,
filtering, conversion and merging of paired-end reads.

The aim of this project is to create an alternative to the USEARCH
tool developed by Robert C. Edgar (2010).


Required to build:
[pkgtools/cwrappers]

Master sites:

Filesize: 276.815 KB

Version history: (Expand)

CVS history: (Expand)


   2024-04-08 23:53:32 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/vsearch: Update to 2.27.1

Fix weak_id option and make searches report weak hits in some cases

Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
   2024-01-23 14:26:59 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/vsearch: Update to 2.27.0

Add FASTQ support to usearch_global and search_exact
Code cleanup and manual clarifications

Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
   2023-11-26 13:35:56 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/vsearch: Update to 2.26.1

A few minor enhancements
Changes: https://github.com/torognes/vsearch/releases
   2023-11-12 16:32:12 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/vsearch: Update to 2.25.0

chimeras_denovo: Allow user to specify mismatch tolerance

Changes: https://github.com/torognes/vsearch/releases
   2023-10-27 16:15:38 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/vsearch: Update to 2.24.0

Upstream code cleanup
Changes: https://github.com/torognes/vsearch/releases
   2023-07-09 18:20:58 by Jason Bacon | Files touched by this commit (6) 
Log message:
biology/vsearch: Update to 2.23.0

Numerous minor fixes and enhancements
Changes: https://github.com/torognes/vsearch/releases
   2021-12-17 20:20:44 by Jason Bacon | Files touched by this commit (7) 
Log message:
biology/vsearch: Update to 2.18.0

Add powerpc64 support
Numerous fixes and enhancements since 2.13

Changes: https://github.com/torognes/vsearch/tags
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes