./biology/vsearch, Versatile open-source tool for metagenomics

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Branch: CURRENT, Version: 2.13.4, Package name: vsearch-2.13.4, Maintainer: bacon

VSEARCH supports de novo and reference based chimera detection,
clustering, full-length and prefix dereplication, rereplication,
reverse complementation, masking, all-vs-all pairwise global
alignment, exact and global alignment searching, shuffling,
subsampling and sorting. It also supports FASTQ file analysis,
filtering, conversion and merging of paired-end reads.

The aim of this project is to create an alternative to the USEARCH
tool developed by Robert C. Edgar (2010).


Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: adb36075cf873620aebae6ab25f33cbac002065e
RMD160: e65a908014cbab903bef81b55c9e67003bb55458
Filesize: 228.871 KB

Version history: (Expand)


CVS history: (Expand)


   2020-03-26 03:37:38 by Joerg Sonnenberger | Files touched by this commit (2)
Log message:
Fix portability
   2019-05-11 16:27:18 by Jason Bacon | Files touched by this commit (7)
Log message:
biology/vsearch: Upgrade to 2.13.4

pkgsrc patches incorporated into upstream release
   2019-05-10 18:19:22 by Jason Bacon | Files touched by this commit (8)
Log message:
biology/vsearch: import vsearch-2.13.3

VSEARCH supports de novo and reference based chimera detection,
clustering, full-length and prefix dereplication, rereplication,
reverse complementation, masking, all-vs-all pairwise global
alignment, exact and global alignment searching, shuffling,
subsampling and sorting. It also supports FASTQ file analysis,
filtering, conversion and merging of paired-end reads.

The aim of this project is to create an alternative to the USEARCH
tool developed by Robert C. Edgar (2010).