./biology/xylem, Tools for manipulation of genetic databases

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Branch: CURRENT, Version: 1.8.7, Package name: xylem-1.8.7, Maintainer: pkgsrc-users

XYLEM is a package of tools designed to exploit the Unix environment to enable
the user to identify, extract and manipulate data from major databases such as
GenBank, EMBL and PIR.


Required to build:
[pkgtools/cwrappers]

Master sites:

Filesize: 408.188 KB

Version history: (Expand)

CVS history: (Expand)


   2024-08-22 19:06:00 by Greg Troxel | Files touched by this commit (14) 
Log message:
various: Typos in MAINTAINER addresses
   2024-08-22 19:01:18 by Greg Troxel | Files touched by this commit (13) 
Log message:
various: Reset MAINTAINER

Email fails, and someone still at the same domain confirmed they are no
longer there.
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Remove SHA1 hashes for distfiles
   2020-01-26 18:32:28 by Roland Illig | Files touched by this commit (981) 
Log message:
all: migrate homepages from http to https

pkglint -r --network --only "migrate"

As a side-effect of migrating the homepages, pkglint also fixed a few
indentations in unrelated lines. These and the new homepages have been
checked manually.
   2018-09-29 14:49:55 by Tobias Nygren | Files touched by this commit (2) 
Log message:
xylem: build fix
   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38) 
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.
   2013-04-06 15:24:21 by Blue Rats | Files touched by this commit (21) 
Log message:
".for variable names should not contain uppercase letters"