pkgsrc.se | The NetBSD package collection

./biology/stacks, Software pipeline for building loci from short-read sequences

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]

Branch: pkgsrc-2020Q1, Version: 2.2nb2, Package name: stacks-2.2nb2, Maintainer: bacon

Stacks is a software pipeline for building loci from short-read sequences, such
as those generated on the Illumina platform. Stacks was developed to work with
restriction enzyme-based data, such as RAD-seq, for the purpose of building
genetic maps and conducting population genomics and phylogeography.

Required to run:
[lang/perl5] [lang/python37] [lang/gcc49-libs]

Required to build:
[lang/gcc49]

Master sites:

http://catchenlab.life.illinois.edu/stacks/source/ (Download)

SHA1: ee99798378b906f356c23da0073d0361440263bf
RMD160: 2f5097c668d9662dbbec705fe3bf00216c11d388
Filesize: 10569.31 KB

Version history: (Expand)

(2020-04-20) Package has been reborn
(2020-04-19) Package added to pkgsrc.se, version stacks-2.2nb2 (created)