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(this page)| 2021-03-20 19:17:08 by Jason Bacon | Files touched by this commit (16) |
Log message: biology/htslib: Update to 1.12 biology/bcftools: Update to 1.12 biology/samtools: Update to 1.12 Numerous enhancements, performance improvements, and bug fixes since 1.10 Minimized pkgsrc patches in all three packages Moved htslib to custom tarball since Github-generated distfiles are incomplete |
| 2020-12-04 21:45:51 by Nia Alarie | Files touched by this commit (456) |
Log message: Revbump packages with a runtime Python dep but no version prefix. For the Python 3.8 default switch. |
| 2020-08-31 20:13:29 by Thomas Klausner | Files touched by this commit (3631) |
Log message: *: bump PKGREVISION for perl-5.32. |
| 2020-07-27 02:29:04 by Jason Bacon | Files touched by this commit (6) |
Log message: biology/bcftools: Upgrade to 1.10.2 Numerous bug fixes, usability improvements and sanity checks were added since 1.9 to prevent common user errors. |
| 2020-01-19 00:36:14 by Roland Illig | Files touched by this commit (3046) |
Log message: all: migrate several HOMEPAGEs to https pkglint --only "https instead of http" -r -F With manual adjustments afterwards since pkglint 19.4.4 fixed a few indentations in unrelated lines. This mainly affects projects hosted at SourceForce, as well as freedesktop.org, CTAN and GNU. |
| 2019-11-02 23:09:01 by Roland Illig | Files touched by this commit (10) |
Log message: biology: align variable assignments pkglint -Wall -F --only aligned --only indent -r |
| 2019-08-11 15:25:21 by Thomas Klausner | Files touched by this commit (3557) |
Log message: Bump PKGREVISIONs for perl 5.30.0 |
| 2019-04-25 09:33:32 by Maya Rashish | Files touched by this commit (620) |
Log message: PKGREVISION bump for anything using python without a PYPKGPREFIX. This is a semi-manual PKGREVISION bump. |
| 2019-03-27 16:58:38 by Jason Bacon | Files touched by this commit (1) |
Log message: biology/bcftools: Add zlib dependency for Linux Resolves build failures on CentOS |
| 2018-11-15 10:21:24 by Adam Ciarcinski | Files touched by this commit (4) |
Log message: bcftools: added version 1.9 BCFtools is a program for variant calling and manipulating files in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. In order to avoid tedious repetion, throughout this document we will use \ "VCF" and "BCF" interchangeably, unless specifically noted. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF work in all situations. Unindexed VCF and BCF and streams work in most, but not all situations. In general, whenever multiple VCFs are read simultaneously, they must be indexed and therefore also compressed. |
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