./wip/py-pygr, Pygr graph database for bioinformatics

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Branch: CURRENT, Version: 0.8.0nb1, Package name: py27-pygr-0.8.0nb1, Maintainer: jihbed.research

Pygr is an open source software project used to develop graph database
interfaces for the popular Python language, with a strong emphasis
on bioinformatics applications ranging from genome-wide analysis of
alternative splicing patterns, to comparative genomics queries of
multi-genome alignment data


Required to run:
[databases/py-bsddb3] [databases/py-mysqldb] [lang/py-pyrex] [devel/py-setuptools] [databases/py-sqlite3]

Required to build:
[pkgtools/cwrappers]

Master sites:

RMD160: aeb5d86c2de6cd64eba452f3805f2ed32bbea55b
Filesize: 1485.896 KB

Version history: (Expand)

CVS history: (Expand)


   2014-05-09 09:38:42 by Thomas Klausner | Files touched by this commit (229) 
Log message:
Mark packages that are not ready for python-3.3 also not ready for 3.4,
until proven otherwise.
   2014-01-25 11:38:08 by Thomas Klausner | Files touched by this commit (171) | Package updated
Log message:
Mark packages as not ready for python-3.x where applicable;
either because they themselves are not ready or because a
dependency isn't. This is annotated by
PYTHON_VERSIONS_INCOMPATIBLE=  33 # not yet ported as of x.y.z
or
PYTHON_VERSIONS_INCOMPATIBLE=  33 # py-foo, py-bar
respectively, please use the same style for other packages,
and check during updates.

Use versioned_dependencies.mk where applicable.
Use REPLACE_PYTHON instead of handcoded alternatives, where applicable.
Reorder Makefile sections into standard order, where applicable.

Remove PYTHON_VERSIONS_INCLUDE_3X lines since that will be default
with the next commit.

Whitespace cleanups and other nits corrected, where necessary.
   2012-10-16 10:28:19 by Thomas Klausner | Files touched by this commit (2) 
Log message:
Improve PLIST. Set LICENSE.
   2012-10-07 15:57:25 by Aleksej Saushev | Files touched by this commit (211) 
Log message:
Drop superfluous PKG_DESTDIR_SUPPORT, "user-destdir" is default these days.
Mark packages that don't or might probably not have staged installation.
   2012-04-08 21:09:41 by Thomas Klausner | Files touched by this commit (127) 
Log message:
Remove python24 and all traces of it from pkgsrc.
Remove devel/py-ctypes (only needed by and supporting python24).
Remove PYTHON_VERSIONS_ACCEPTED and PYTHON_VERSIONS_INCOMPATIBLE
lines that just mirror defaults now.
Miscellaneous cleanup while editing all these files.
   2012-01-30 07:46:59 by ndb | Files touched by this commit (2) 
Log message:
PYVERSSUFFIX in PLIST.
   2011-02-25 10:47:47 by Thomas Klausner | Files touched by this commit (76) 
Log message:
Let's assume for now that everything that worked with python-2.6 also
works with python-2.7.
   2009-12-05 21:54:04 by Kamel Derouiche | Files touched by this commit (4) | Imported package
Log message:
Import py25-pygr-0.8.0 as wip/py-pygr.

Pygr is an open source software project used to develop graph database
interfaces for the popular Python language, with a strong emphasis
on bioinformatics applications ranging from genome-wide analysis of
alternative splicing patterns, to comparative genomics queries of
multi-genome alignment data