NOTICE: This package has been removed from pkgsrc

./wip/bowtie, Ultrafast, memory-efficient short read aligner

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ]

Branch: CURRENT, Version: 1.1.2, Package name: bowtie-1.1.2, Maintainer: bacon

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.

WWW: http://bowtie-bio.sourceforge.net/index.shtml


Required to run:
[lang/perl5] [lang/python37]

Required to build:
[pkgtools/cwrappers]

Master sites:

RMD160: 723f8cc273c6db3031c2dc4b8bd7fab70fbd78f2
Filesize: 7647.799 KB

Version history: (Expand)

CVS history: (Expand)


   2015-01-28 21:52:06 by Jason Bacon | Files touched by this commit (1) 
Log message:
Add buildlink
   2015-01-28 17:21:48 by Jason Bacon | Files touched by this commit (5) 
Log message:
Update to 1.0.1
   2014-06-01 14:49:35 by Thomas Klausner | Files touched by this commit (208) 
Log message:
Remove FETCH_USING.
It is a user-defined variable and should NOT be set in Makefiles.
   2013-09-01 18:23:40 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
Simplify installation commands.
   2013-09-01 18:17:19 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
We use HOMEPAGE to store home page.
   2013-09-01 18:15:44 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
Use PKGNAME_NOREV to derive WRKSRC.
   2013-09-01 18:08:58 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
Fix interpreter in installed perl scripts.
Depend on perl as well.
   2013-09-01 18:02:54 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
Create installation directories.