./wip/glimmerm, Gene finder developed specifically for eukaryotes

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Branch: CURRENT, Version: 2.5.1, Package name: GlimmerM-2.5.1, Maintainer: pkgsrc-users

A gene finder derived from Glimmer, but developed specifically for
eukaryotes. It is based on a dynamic programing algorithm that
considers all combinations of possible exons for inclusion in a gene
model and chooses the best of these combinations. It uses Interpolated
Markov Model(IMM) for selecting the best gene model. The system has
been trained for Arabidopsis thaliana, Oryza sativa (rice), and
Plasmodium falciparum (the malaria parasite), and should work well on
closely related organisms.


Required to build:
[pkgtools/cwrappers]

Master sites:

RMD160: a32bfa8c74e3f469fbe1e9bbec364dc2f23f6360
Filesize: 29981.86 KB

Version history: (Expand)

CVS history: (Expand)


   2012-09-29 02:15:14 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
Support staged installation.
   2009-10-11 12:44:25 by Thomas Klausner | Files touched by this commit (267) 
Log message:
Remove obsolete @dirrm lines.
   2006-10-29 09:32:37 by Sergey Svishchev | Files touched by this commit (192) 
Log message:
Delint:
- convert spaces to tabs (pkglint --autofix)
- set, not append to USE_LANGUAGES
   2006-09-09 04:49:32 by OBATA Akio | Files touched by this commit (37) 
Log message:
Rename variable MAKEFILE to MAKE_FILE.
   2006-04-21 15:19:05 by Roland Illig | Files touched by this commit (8) 
Log message:
Fixed pkglint warnings.
   2005-05-24 12:29:55 by Roland Illig | Files touched by this commit (1) 
Log message:
Replaced USE_GNU_TOOLS+=make with USE_TOOLS+=gmake.
   2005-05-23 12:27:14 by Roland Illig | Files touched by this commit (1) 
Log message:
Removed trailing white-space.
   2005-04-20 00:48:10 by David | Files touched by this commit (1) 
Log message:
white space clean up on line 17