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./wip/jellyfish, Fast, memory-efficient counting of k-mers in DNA

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Branch: CURRENT, Version: 1.1.11, Package name: jellyfish-1.1.11, Maintainer: pkgsrc-users

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
A k-mer is a substring of length k, and counting the occurrences of all such
substrings is a central step in many analyses of DNA sequence. JELLYFISH can
count k-mers quickly by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase parallelism.

Required to build:
[pkgtools/cwrappers]

Master sites:

http://www.cbcb.umd.edu/software/jellyfish/ (Download)

RMD160: 30c4ed6d264cbe736ab9da977074f743998fb1d2
Filesize: 1042.127 KB

Version history: (Expand)

(2024-09-19) Package has been reborn
(2024-09-15) Package deleted from pkgsrc
(2023-02-13) Package has been reborn
(2020-09-29) Package has been reborn
(2020-09-29) Package deleted from pkgsrc
(2020-01-02) Package has been reborn

CVS history: (Expand)

2015-01-28 17:36:28 by Jason Bacon | Files touched by this commit (5)

Log message:
Import jellyfish-1.1.11 as wip/jellyfish.

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
A k-mer is a substring of length k, and counting the occurrences of all such
substrings is a central step in many analyses of DNA sequence. JELLYFISH can
count k-mers quickly by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase parallelism.

WWW: http://www.genome.umd.edu/jellyfish.html