./wip/nanoplot, Plotting suite for Oxford Nanopore sequencing data and alignments

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Branch: CURRENT, Version: 1.38.0.20210602, Package name: NanoPlot-1.38.0.20210602, Maintainer: pkgsrc-users

Plotting tool for long read sequencing data and alignments.

This script performs data extraction from Oxford Nanopore sequencing
data in the following formats:

- fastq files (can be bgzip, bzip2 or gzip compressed)

- fastq files generated by albacore, guppy or MinKNOW containing
additional information (can be bgzip, bzip2 or gzip compressed)

- sorted bam files

- sequencing_summary.txt output table generated by albacore, guppy or
MinKnow basecalling (can be gzip, bz2, zip and xz compressed)

- fasta files (can be bgzip, bzip2 or gzip compressed)

Multiple files of the same type can be offered simultaneously

NanoPlot creates:
- a statistical summary
- a number of plots
- a html summary file

Master sites:

Version history: (Expand)