./wip/repeatmasker, Find interspersed repeats and low complexity DNA sequences

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]


Branch: CURRENT, Version: 4.1.2.1, Package name: repeatmasker-4.1.2.1, Maintainer: pkgsrc-users

RepeatMasker is a program that screens DNA sequences for interspersed
repeats and low complexity DNA sequences. The output of the program is
a detailed annotation of the repeats that are present in the query
sequence as well as a modified version of the query sequence in which
all the annotated repeats have been masked (default: replaced by
Ns). Sequence comparisons in RepeatMasker are performed by the program
cross_match, an efficient implementation of the Smith-Waterman-Gotoh
algorithm developed by Phil Green, or by WU-Blast developed by Warren
Gish.


Master sites:

SHA1: 0fb73acde3206b18fb687aa30caea9578230b1f9
RMD160: bba59a9ca8b2c069618d1058e1d440a37d93f544
Filesize: 342185.188 KB

Version history: (Expand)