./wip/t-coffee, Multiple Sequence Alignment Package

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Branch: CURRENT, Version: 1.37, Package name: t-coffee-1.37, Maintainer: dprice

T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment.
Multiple sequence alignment programs are to align a set of sequences
previously gathered using other programs such as blast, fasta, etc.
T-Coffee allows one to combine results obtained with several aligment
methods. If one alignment is from ClustalW and second is from Dialigni,
T-Coffee will combine all that information and produce a new multiple
sequence having the best alignment from these methods.
By default, T-Coffee will compare all your sequences two by two,
producing a global alignment and a series of local alignments (using lalign).
The program will then combine all these alignments into amultiple alignment.


Required to run:
[biology/clustalw]

Required to build:
[pkgtools/cwrappers]

Master sites:

RMD160: eeb5dfc632e73d676fd336ead1ca9b6cfb77df1f
Filesize: 1336.837 KB

Version history: (Expand)

CVS history: (Expand)


   2012-11-23 23:33:55 by othyro | Files touched by this commit (43) 
Log message:
Mostly whitespace and blank line fixing. Some files also got minor
formatting corrections as well as other corrections.
   2012-10-07 18:27:12 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
Support staged installation.
   2009-10-11 12:45:10 by Thomas Klausner | Files touched by this commit (261) 
Log message:
Remove obsolete @dirrm lines.
   2006-09-09 04:49:32 by OBATA Akio | Files touched by this commit (37) 
Log message:
Rename variable MAKEFILE to MAKE_FILE.
   2005-09-28 16:24:39 by Roland Illig | Files touched by this commit (55) 
Log message:
Removed trailing white-space.
   2005-09-28 08:41:35 by Roland Illig | Files touched by this commit (132) 
Log message:
Added RMD160 checksums.
   2005-05-23 12:27:56 by Roland Illig | Files touched by this commit (1) 
Log message:
Removed trailing white-space.
   2005-04-18 20:55:32 by David | Files touched by this commit (1) 
Log message:
removed USE_BUILDLINK3