./wip/vcf-split, Split a multi-sample VCF into single-sample VCFs

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]


Branch: CURRENT, Version: 0.1.5.10, Package name: vcf-split-0.1.5.10, Maintainer: bacon

Vcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands
of output files simultaneously. Parsing the TOPMed human chromosome 1 BCF
with bcftools takes two days, so extracting the 137,977 samples one at a time
or using thousands of parallel readers of the same file is impractical.
Vcf-split solves this by generating thousands of single-sample outputs during
a single sweep through the multi-sample input.


Required to build:
[pkgtools/cwrappers] [wip/biolibc]

Master sites:


Version history: (Expand)