./biology/kallisto, Quantify abundances of transcripts from RNA-Seq data

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Branch: CURRENT, Version: 0.45.0, Package name: kallisto-0.45.0, Maintainer: bacon

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq
data, or more generally of target sequences using high-throughput sequencing
reads. It is based on the novel idea of pseudoalignment for rapidly determining
the compatibility of reads with targets, without the need for alignment.


Required to run:
[archivers/szip] [devel/hdf5] [biology/htslib]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: ab0890c5d675d678dbcf415a86512b4694b3a4a6
RMD160: f482f7525dde0bfc2425cf803812c1c7748c882e
Filesize: 2197.686 KB

Version history: (Expand)


CVS history: (Expand)


   2018-12-21 20:00:57 by Jason Bacon | Files touched by this commit (7)
Log message:
biology/kallisto: import kallisto-0.45.0

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq
data, or more generally of target sequences using high-throughput sequencing
reads. It is based on the novel idea of pseudoalignment for rapidly determining
the compatibility of reads with targets, without the need for alignment.