./biology/kallisto, Quantify abundances of transcripts from RNA-Seq data

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Branch: CURRENT, Version: 0.46.1, Package name: kallisto-0.46.1, Maintainer: bacon

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq
data, or more generally of target sequences using high-throughput sequencing
reads. It is based on the novel idea of pseudoalignment for rapidly determining
the compatibility of reads with targets, without the need for alignment.


Required to run:
[devel/hdf5] [biology/htslib] [archivers/libaec]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: e39adb9801049836dcd7ac52e775f64af4d0a51b
RMD160: 8e42c5c52f19ec2e37f8591f7472a969b479bfd4
Filesize: 2201.719 KB

Version history: (Expand)

CVS history: (Expand)


   2020-07-30 09:59:19 by Thomas Klausner | Files touched by this commit (2) | Package updated
Log message:
kallisto: remove patches that were removed from distinfo during update
   2020-07-23 21:22:00 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/kallisto: Upgrade to 0.46.1

Minor enhancements since 0.45
0.46.2 is available, but has serious regressions.
Reverted to bundled htslib 1.4.1, since kallisto source contains modified
htslib files that are incompatible with the current 1.10.2 package.
   2019-05-01 14:38:54 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/kallisto: Switch from archivers/szip to archivers/libaec

libaec is a BSD-licensed drop-in replacement for the non-redistributable szip
   2018-12-21 20:00:57 by Jason Bacon | Files touched by this commit (7) 
Log message:
biology/kallisto: import kallisto-0.45.0

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq
data, or more generally of target sequences using high-throughput sequencing
reads. It is based on the novel idea of pseudoalignment for rapidly determining
the compatibility of reads with targets, without the need for alignment.