./biology/htslib, C library for high-throughput sequencing data formats

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Branch: CURRENT, Version: 1.10.2nb2, Package name: htslib-1.10.2nb2, Maintainer: bacon

HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.


Required to run:
[www/curl]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: 0ac4b86e49556d7dcaa89d4cce2661c9ca706631
RMD160: 6d8b6a362297345420dc9acc544029276ce4b1b6
Filesize: 1418.142 KB

Version history: (Expand)

CVS history: (Expand)


   2020-08-31 20:13:29 by Thomas Klausner | Files touched by this commit (3631) | Package updated
Log message:
*: bump PKGREVISION for perl-5.32.
   2020-07-22 17:36:55 by Jason Bacon | Files touched by this commit (2) 
Log message:
bioloty/htslib: Correct bl2 (ABI bump, not API)

Also add -if to autoreconf
   2020-07-22 16:50:14 by Jason Bacon | Files touched by this commit (7) 
Log message:
biology/htslib: Upgrade to 1.10.2

Numerous enhancements and bug fixes since 1.9, including:

Elimited refernce file size limits
SAM header API
On-the-fly indexing
Improved Amazon S3 interface

This package contains a patch for recent libcurl not in the upstream release
   2020-05-22 12:56:49 by Adam Ciarcinski | Files touched by this commit (624) 
Log message:
revbump after updating security/nettle
   2020-05-06 16:05:09 by Adam Ciarcinski | Files touched by this commit (591) | Package updated
Log message:
revbump after boost update
   2020-03-08 17:51:54 by Thomas Klausner | Files touched by this commit (2833) 
Log message:
*: recursive bump for libffi
   2020-01-26 18:32:28 by Roland Illig | Files touched by this commit (981) 
Log message:
all: migrate homepages from http to https

pkglint -r --network --only "migrate"

As a side-effect of migrating the homepages, pkglint also fixed a few
indentations in unrelated lines. These and the new homepages have been
checked manually.
   2020-01-18 22:51:16 by Jonathan Perkin | Files touched by this commit (1836) 
Log message:
*: Recursive revision bump for openssl 1.1.1.