./biology/atac-seq, Core tools needed for ATAC-Seq analysis

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Branch: CURRENT, Version: 1.5.0, Package name: atac-seq-1.5.0, Maintainer: bacon

The atac-seq meta-package provides the core tools needed for
performing a typical ATAC-Seq differential accessibility analysis,
including adapter trimming, quality control, alignment, peak calling,
and identification of differentially accessible peaks. Researchers
may want additional tools for data manipulation, gene ontology,
etc.

Version history: (Expand)

CVS history: (Expand)


   2024-04-11 16:49:41 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/atac-seq: Update to 1.5.0

Remove multiqc dep, responsible for 117 dependencies, including
gcc, llvm, and rust.
   2024-01-10 17:10:17 by Jason Bacon | Files touched by this commit (2) 
Log message:
biology/atac-seq: Update to 1.4

Add biology/py-macs3 dep to metapackage
   2023-12-23 17:23:22 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/atac-seq: Adjust python versions to match py-macs2

Add sra-tools and a few commonly used archivers to metapkg
   2023-11-06 00:48:31 by Thomas Klausner | Files touched by this commit (3) 
Log message:
py-macs2: not for Python 3.12
   2023-08-14 07:25:36 by Thomas Klausner | Files touched by this commit (1247) 
Log message:
*: recursive bump for Python 3.11 as new default
   2023-07-28 18:45:50 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/atac-seq: Add curl to metaport deps

Standardizing on a download tool simplifies pipelines
   2023-07-22 15:30:15 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/atac-seq: Update to 1.2

Add py-multiqc to metapackage
   2023-07-01 10:37:47 by Thomas Klausner | Files touched by this commit (105) | Package updated
Log message:
*: restrict py-numpy users to 3.9+ in preparation for update