./biology/bcftools, Tools for manipulating BCF and VCF variant call files

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Branch: CURRENT, Version: 1.15nb2, Package name: bcftools-1.15nb2, Maintainer: bacon

BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All
commands work transparently with both VCFs and BCFs, both
uncompressed and BGZF-compressed.


Required to run:
[biology/htslib] [lang/python37]

Required to build:
[pkgtools/cwrappers]

Master sites:

Filesize: 3269.435 KB

Version history: (Expand)


CVS history: (Expand)


   2022-06-30 13:19:02 by Nia Alarie | Files touched by this commit (524)
Log message:
*: Revbump packages that use Python at runtime without a PKGNAME prefix
   2022-06-28 13:38:00 by Thomas Klausner | Files touched by this commit (3952)
Log message:
*: recursive bump for perl 5.36
   2022-02-27 00:14:33 by Jason Bacon | Files touched by this commit (4)
Log message:
biology/bcftools: Update to 1.15

Several minor enhancements and bug fixes
Changes: https://github.com/samtools/bcftools/tags
   2021-12-17 16:14:36 by Jason Bacon | Files touched by this commit (4)
Log message:
biology/bcftools: Update to 1.14

Numerous fixes and enhancments since 1.12

Changes: https://github.com/samtools/bcftools/tags
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73)
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73)
Log message:
biology: Remove SHA1 hashes for distfiles
   2021-05-24 21:56:06 by Thomas Klausner | Files touched by this commit (3575)
Log message:
*: recursive bump for perl 5.34
   2021-03-20 19:17:08 by Jason Bacon | Files touched by this commit (16)
Log message:
biology/htslib: Update to 1.12
biology/bcftools: Update to 1.12
biology/samtools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.10
Minimized pkgsrc patches in all three packages
Moved htslib to custom tarball since Github-generated distfiles are incomplete