./biology/bioperl, Perl tools for computational molecular biology

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Branch: CURRENT, Version: 1.7.7nb5, Package name: bioperl-1.7.7nb5, Maintainer: pkgsrc-users

The Bioperl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research.

Bioperl is a collection of object-oriented Perl modules created by the
Bioperl Project. It forms the basis of a large number of bioinformatics
and genomics applications.


Required to run:
[textproc/p5-XML-Simple] [textproc/p5-libxml] [textproc/p5-YAML] [textproc/p5-XML-DOM] [textproc/p5-XML-Parser] [textproc/p5-XML-SAX] [textproc/p5-XML-SAX-Writer] [textproc/p5-XML-Twig] [textproc/p5-XML-Writer] [www/p5-HTML-TableExtract] [www/p5-libwww] [www/p5-HTML-Parser] [graphics/p5-GraphViz] [graphics/p5-GD] [lang/perl5] [net/p5-SOAP-Lite] [math/p5-Spreadsheet-ParseExcel] [devel/p5-Error] [devel/p5-Array-Compare] [devel/p5-List-MoreUtils] [devel/p5-Set-Scalar] [devel/p5-Graph] [devel/p5-IO-String] [devel/p5-Clone] [graphics/p5-SVG] [devel/p5-Sort-Naturally] [biology/p5-Bio-ASN1-EntrezGene] [graphics/p5-SVG-Graph] [print/p5-PostScript] [math/p5-Algorithm-Munkres] [devel/p5-Convert-Binary-C] [devel/p5-Data-Stag]

Required to build:
[textproc/p5-Text-Diff] [devel/p5-Module-Build] [devel/p5-Test-Most] [pkgtools/cwrappers]

Master sites: (Expand)

Filesize: 7356.232 KB

Version history: (Expand)

CVS history: (Expand)


   2024-11-16 13:08:07 by Thomas Klausner | Files touched by this commit (2504) 
Log message:
*: recursive bump for perl 5.40
   2023-07-06 11:43:03 by Thomas Klausner | Files touched by this commit (2483) 
Log message:
*: recursive bump for perl 5.38
   2023-06-06 14:42:56 by Taylor R Campbell | Files touched by this commit (1319) 
Log message:
Mass-change BUILD_DEPENDS to TOOL_DEPENDS outside mk/.

Almost all uses, if not all of them, are wrong, according to the
semantics of BUILD_DEPENDS (packages built for target available for
use _by_ tools at build-time) and TOOL_DEPEPNDS (packages built for
host available for use _as_ tools at build-time).

No change to BUILD_DEPENDS as used correctly inside buildlink3.

As proposed on tech-pkg:
https://mail-index.netbsd.org/tech-pkg/2023/06/03/msg027632.html
   2022-06-28 13:38:00 by Thomas Klausner | Files touched by this commit (3952) 
Log message:
*: recursive bump for perl 5.36
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Remove SHA1 hashes for distfiles
   2021-06-23 22:33:18 by Nia Alarie | Files touched by this commit (103) 
Log message:
Revbump for MySQL default change
   2021-05-24 21:56:06 by Thomas Klausner | Files touched by this commit (3575) 
Log message:
*: recursive bump for perl 5.34