./biology/stacks, Software pipeline for building loci from short-read sequences

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Branch: CURRENT, Version: 2.2nb3, Package name: stacks-2.2nb3, Maintainer: bacon

Stacks is a software pipeline for building loci from short-read sequences, such
as those generated on the Illumina platform. Stacks was developed to work with
restriction enzyme-based data, such as RAD-seq, for the purpose of building
genetic maps and conducting population genomics and phylogeography.


Required to run:
[lang/perl5] [lang/gcc49-libs] [lang/python37]

Required to build:
[lang/gcc49] [pkgtools/cwrappers]

Master sites:

SHA1: ee99798378b906f356c23da0073d0361440263bf
RMD160: 2f5097c668d9662dbbec705fe3bf00216c11d388
Filesize: 10569.31 KB

Version history: (Expand)


CVS history: (Expand)


   2020-08-31 20:13:29 by Thomas Klausner | Files touched by this commit (3631) | Package updated
Log message:
*: bump PKGREVISION for perl-5.32.
   2019-08-11 15:25:21 by Thomas Klausner | Files touched by this commit (3557) | Package updated
Log message:
Bump PKGREVISIONs for perl 5.30.0
   2019-04-25 09:33:32 by Maya Rashish | Files touched by this commit (620)
Log message:
PKGREVISION bump for anything using python without a PYPKGPREFIX.

This is a semi-manual PKGREVISION bump.
   2018-12-22 22:52:07 by Jason Bacon | Files touched by this commit (4)
Log message:
biology/stacks: import stacks-2.2

Stacks is a software pipeline for building loci from short-read sequences, such
as those generated on the Illumina platform. Stacks was developed to work with
restriction enzyme-based data, such as RAD-seq, for the purpose of building
genetic maps and conducting population genomics and phylogeography.