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biology/vcf-split,
Split a multi-sample VCF into single-sample VCFs
Branch: CURRENT,
Version: 0.1.5.19,
Package name: vcf-split-0.1.5.19,
Maintainer: baconVcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands
of output files simultaneously. Parsing the TOPMed human chromosome 1 BCF
with bcftools takes two days, so extracting the 137,977 samples one at a time
or using thousands of parallel readers of the same file is impractical.
Vcf-split solves this by generating thousands of single-sample outputs during
a single sweep through the multi-sample input.
Master sites:
Version history: (Expand)
- (2024-11-29) Updated to version: vcf-split-0.1.5.19
- (2023-10-28) Updated to version: vcf-split-0.1.5.10
- (2022-12-12) Updated to version: vcf-split-0.1.5.4
- (2022-06-12) Updated to version: vcf-split-0.1.5
- (2022-03-16) Updated to version: vcf-split-0.1.4
- (2021-12-14) Updated to version: vcf-split-0.1.3.3
CVS history: (Expand)