Log message:
py-tifffile: updated to 2023.7.10

2023.7.10

- Increase default strip size to 256 KB when writing with compression.
- Fix ZarrTiffStore with non-default chunkmode.

2023.7.4

- Pass 4992 tests.
- Add option to return selection from imread.
- Fix reading OME series with missing trailing frames.
- Fix fsspec reference for WebP compressed segments missing alpha channel.
- Fix linting issues.
- Detect files written by Agilent Technologies.
- Drop support for Python 3.8 and numpy < 1.21 (NEP29).

Log message:
*: restrict py-numpy users to 3.9+ in preparation for update

Log message:
py-tifffile: updated to 2023.4.12

2023.4.12

- Pass 4988 tests.
- Do not write duplicate ImageDescription tags from extratags (breaking).
- Support multifocal SVS files
- Log warning when filtering out extratags.
- Fix writing OME-TIFF with image description in extratags.
- Ignore invalid predictor tag value if prediction is not used.
- Raise KeyError if ZarrStore is missing requested chunk.

2023.3.21

- Fix reading MMstack with missing data

2023.3.15

- Fix corruption using tile generators with prediction/compression
- Add parser for Micro-Manager MMStack series (breaking).
- Return micromanager_metadata IndexMap as numpy array (breaking).
- Revert optimizations for Micro-Manager OME series.
- Do not use numcodecs zstd in write_fsspec (kerchunk issue 317).
- More type annotations.

2023.2.28

- Fix reading some Micro-Manager metadata from corrupted files.
- Speed up reading Micro-Manager indexmap for creation of OME series.

2023.2.27

- Use Micro-Manager indexmap offsets to create virtual TiffFrames.
- Fixes for future imagecodecs.

2023.2.3

- Fix overflow in calculation of databytecounts for large NDPI files.

2023.2.2

- Fix regression reading layered NDPI files.
- Add option to specify offset in FileHandle.read_array.

2023.1.23

- Support reading NDTiffStorage.
- Support reading PIXTIFF compression.
- Support LERC with Zstd or Deflate compression.
- Do not write duplicate and select extratags.
- Allow to write uncompressed image data beyond 4 GB in classic TIFF.
- Add option to specify chunkshape and dtype in FileSequence.asarray.
- Add option for imread to write to output in FileSequence.asarray
- Add function to read GDAL structural metadata.
- Add function to read NDTiff.index files.
- Fix IndexError accessing TiffFile.mdgel_metadata in non-MDGEL files.
- Fix unclosed file ResourceWarning in TiffWriter.
- Fix non-bool predictor arguments
- Relax detection of OME-XML
- Rename some TiffFrame parameters (breaking).
- Deprecate squeeze_axes (will change signature).
- Use defusexml in xml2dict.

2022.10.10

- Fix RecursionError in peek_iterator.
- Fix reading NDTiffv3 summary settings.
- Fix svs_description_metadata parsing
- Fix ImportError if Python was built without zlib or lzma.
- Fix bool of COMPRESSION and PREDICTOR instances.
- Deprecate non-sequence extrasamples arguments.
- Parse SCIFIO metadata as ImageJ.

2022.8.12

- Fix writing ImageJ format with hyperstack argument.
- Fix writing description with metadata disabled.
- Add option to disable writing shaped metadata in TiffWriter.

2022.8.8

- Fix regression using imread out argument
- Fix imshow show argument.
- Support fsspec OpenFile.

2022.8.3

- Fix regression writing default resolutionunit
- Add strptime function parsing common datetime formats.

2022.7.31

- Fix reading corrupted WebP compressed segments missing alpha channel
- Fix regression reading compressed ImageJ files.

2022.7.28

- Rename FileSequence.labels attribute to dims (breaking).
- Rename tifffile_geodb module to geodb (breaking).
- Rename TiffFile._astuple method to astuple (breaking).
- Rename noplots command line argument to maxplots (breaking).
- Fix reading ImageJ hyperstacks with non-TZC order.
- Fix colorspace of JPEG segments encoded by Bio-Formats.
- Fix fei_metadata for HELIOS FIB-SEM
- Add xarray style properties to TiffPage (WIP).
- Add option to specify OME-XML for TiffFile.
- Add option to control multiscales in ZarrTiffStore.
- Support writing to uncompressed ZarrTiffStore.
- Support writing empty images with tiling.
- Support overwriting some tag values in NDPI
- Support Jetraw compression (experimental).
- Standardize resolution parameter and property.
- Deprecate third resolution argument on write (use resolutionunit).
- Deprecate tuple type compression argument on write (use compressionargs).
- Deprecate enums in TIFF namespace (use enums from module).
- Improve default number of threads to write compressed segments
- Parse metaseries time values as datetime objects
- Increase internal read and write buffers to 256 MB.
- Convert some warnings to debug messages.
- Declare all classes final.
- Add script to generate documentation via Sphinx.
- Convert docstrings to Google style with Sphinx directives.

2022.5.4

- Allow to write NewSubfileType=0
- Support writing iterators of strip or tile bytes.
- Convert iterables (not iterators) to NumPy arrays when writing.
- Explicitly specify optional keyword parameters for imread and imwrite.
- Return number of written bytes from FileHandle write functions.

2022.4.28

- Add option to specify fsspec version 1 URL template name
- Ignore invalid dates in UIC tags
- Fix zlib_encode and lzma_encode to work with non-contiguous arrays
- Fix delta_encode to preserve byteorder of ndarrays.
- Move Imagecodecs fallback functions to private module and add tests.

2022.4.26

- Fix AttributeError in TiffFile.shaped_metadata
- Fix TiffTag.overwrite with pre-packed binary value.
- Write sparse TIFF if tile iterator contains None.
- Raise ValueError when writing photometric mode with too few samples.
- Improve test coverage.

2022.4.22

- Add type hints for Python 3.10 (WIP).
- Fix Mypy errors (breaking).
- Mark many parameters positional-only or keyword-only (breaking).
- Remove deprecated pages parameter from imread (breaking).
- Remove deprecated compress and ijmetadata write parameters (breaking).
- Remove deprecated fastij and movie parameters from TiffFile (breaking).
- Remove deprecated multifile parameters from TiffFile (breaking).
- Remove deprecated tif parameter from TiffTag.overwrite (breaking).
- Remove deprecated file parameter from FileSequence.asarray (breaking).
- Remove option to pass imread class to FileSequence (breaking).
- Remove optional parameters from __str__ functions (breaking).
- Rename TiffPageSeries.offset to dataoffset (breaking)
- Change TiffPage.pages to None if no SubIFDs are present (breaking).
- Change TiffPage.index to int (breaking).
- Change TiffPage.is_contiguous, is_imagej, and is_shaped to bool (breaking).
- Add TiffPage imagej_description and shaped_description properties.
- Add TiffFormat abstract base class.
- Deprecate lazyattr and use functools.cached_property instead (breaking).
- Julian_datetime raises ValueError for dates before year 1 (breaking).
- Regressed import time due to typing.

2022.4.8

- Add _ARRAY_DIMENSIONS attributes to ZarrTiffStore.
- Allow C instead of S axis when writing OME-TIFF.
- Fix writing OME-TIFF with separate samples.
- Fix reading unsqueezed pyramidal OME-TIFF series.

2022.3.25

- Fix another ValueError using ZarrStore with zarr >= 2.11.0
- Add parser for Hamamatsu streak metadata.
- Improve hexdump.

2022.3.16

- Use multi-threading to compress strips and tiles.
- Raise TiffFileError when reading corrupted strips and tiles
- Fix ScanImage single channel count
- Add parser for AstroTIFF FITS metadata.

2022.2.9

- Fix ValueError using multiscale ZarrStore with zarr >= 2.11.0.
- Raise KeyError if ZarrStore does not contain key.
- Limit number of warnings for missing files in multifile series.
- Allow to save colormap to 32-bit ImageJ files

2022.2.2

- Fix TypeError when second ImageDescription tag contains non-ASCII
- Fix parsing IJMetadata with many IJMetadataByteCounts
- Detect MicroManager NDTiffv2 header (not tested).
- Remove cache from ZarrFileSequenceStore (use zarr.LRUStoreCache).
- Raise limit on maximum number of pages.
- Use J2K format when encoding JPEG2000 segments.
- Formally deprecate imsave and TiffWriter.save.
- Drop support for Python 3.7 and NumPy < 1.19 (NEP29).

Log message:
python: egg.mk: add USE_PKG_RESOURCES flag

This flag should be set for packages that import pkg_resources
and thus need setuptools after the build step.

Set this flag for packages that need it and bump PKGREVISION.

Log message:
*: bump PKGREVISION for egg.mk users

They now have a tool dependency on py-setuptools instead of a DEPENDS

Log message:
Forget about Python 3.6

Log message:
py-tifffile: updated to 2021.11.2

2021.11.2
    Pass 4731 tests.
    Lazy-load non-essential tag values (breaking).
    Warn when reading from closed file.
    Support ImageJ 'prop' metadata type.
    Support writing indexed ImageJ format.
    Fix multi-threaded access of multi-page Zarr stores with chunkmode 2.
    Raise error if truncate is used with compression, packints, or tile.
    Read STK metadata without UIC2tag.
    Improve log and warning messages (WIP).
    Improve string representation of large tag values.
2021.10.12
    Revert renaming of 'file' parameter in FileSequence.asarray (breaking).
    Deprecate 'file' parameter in FileSequence.asarray.
2021.10.10
    Disallow letters as indices in FileSequence; use categories (breaking).
    Do not warn of missing files in FileSequence; use files_missing property.
    Support predictors in ZarrTiffStore.write_fsspec.
    Add option to specify zarr group name in write_fsspec.
    Add option to specify categories for FileSequence patterns.
    Add option to specify chunk shape and dtype for ZarrFileSequenceStore.
    Add option to tile ZarrFileSequenceStore and FileSequence.asarray.
    Add option to pass additional zattrs to Zarr stores.
    Detect Roche BIF files.
2021.8.30
    Fix horizontal differencing with non-native byte order.
    Fix multi-threaded access of memory-mappable, multi-page Zarr stores.
2021.8.8
    Fix tag offset and valueoffset for NDPI > 4 GB.
2021.7.30
    Deprecate first parameter to TiffTag.overwrite (no longer required).
    TiffTag init API change (breaking).
    Detect Ventana BIF series and warn that tiles are not stitched.
    Enable reading PreviewImage from RAW formats.
    Work around numpy.ndarray.tofile is very slow for non-contiguous arrays.
    Fix issues with PackBits compression (requires imagecodecs 2021.7.30).
2021.7.2
    Decode complex integer images found in SAR GeoTIFF.
    Support reading NDPI with JPEG-XR compression.
    Deprecate TiffWriter RGB auto-detection, except for RGB24/48 and RGBA32/64.
2021.6.14
    Set stacklevel for deprecation warnings.
    Fix svs_description_metadata for SVS with double header.
    Fix reading JPEG compressed CMYK images.
    Support ALT_JPEG and JPEG_2000_LOSSY compression found in Bio-Formats.
    Log warning if TiffWriter auto-detects RGB mode (specify photometric).

Log message:
graphics: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes

Log message:
graphics: Remove SHA1 hashes for distfiles

Log message:
py-tifffile: updated to 2021.6.6

2021.6.6
    Pass 4405 tests.
    Fix TIFF.COMPESSOR typo.
    Round resolution numbers that do not fit in 64-bit rationals.
    Add support for JPEG XL compression.
    Add numcodecs compatible TIFF codec.
    Rename ZarrFileStore to ZarrFileSequenceStore (breaking).
    Add method to export fsspec ReferenceFileSystem from ZarrFileStore.
    Fix fsspec ReferenceFileSystem v1 for multifile series.
    Fix creating OME-TIFF with micron character in OME-XML.