./math/R-PHYLOGR, Functions for phylogenetically based statistical analyses

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Branch: CURRENT, Version: 1.0.10, Package name: R-PHYLOGR-1.0.10, Maintainer: pkgsrc-users

Manipulation and analysis of phylogenetically simulated data sets and
phylogenetically based analyses using GLS.


Required to run:
[math/R]

Required to build:
[pkgtools/cwrappers]

Master sites: (Expand)


Version history: (Expand)


CVS history: (Expand)


   2019-08-08 21:53:58 by Brook Milligan | Files touched by this commit (189) | Package updated
Log message:
Update all R packages to canonical form.

The canonical form [1] of an R package Makefile includes the
following:

- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
  needed), and CATEGORIES.

- HOMEPAGE is not present but defined in math/R/Makefile.extension to
  refer to the CRAN web page describing the package.  Other relevant
  web pages are often linked from there via the URL field.

This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.

[1] http://mail-index.netbsd.org/tech-pkg/2 … 21711.html
   2019-07-31 20:18:35 by Brook Milligan | Files touched by this commit (1) | Package updated
Log message:
R-PHYLOGR: update to canonical form of an R package.

Update to the canonical form of an R package and fix the LICENSE
field.
   2018-07-28 16:40:53 by Brook Milligan | Files touched by this commit (126)
Log message:
Remove MASTER_SITES= from individual R package Makefiles.

Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES.  Consequently, it is redundant for the individual
packages to do the same.  Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.
   2018-05-31 03:58:17 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 1.0.10
   2016-01-09 15:12:48 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 1.0.8

Upstream changes:
Version 1.0.8 2010/08/09
- path.packages instead of .path.package (later is defunct).
- change in lm.phylog to prevent (incorrect) note about no visible binding
  for global variable \xe2\x80\x98sim.counter\xe2\x80\x99 in a call to subset.
   2015-11-04 00:33:46 by Alistair G. Crooks | Files touched by this commit (262)
Log message:
Add SHA512 digests for distfiles for math category

Problems found locating distfiles:
	Package dfftpack: missing distfile dfftpack-20001209.tar.gz
	Package eispack: missing distfile eispack-20001130.tar.gz
	Package fftpack: missing distfile fftpack-20001130.tar.gz
	Package linpack: missing distfile linpack-20010510.tar.gz
	Package minpack: missing distfile minpack-20001130.tar.gz
	Package odepack: missing distfile odepack-20001130.tar.gz
	Package py-networkx: missing distfile networkx-1.10.tar.gz
	Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
	Package quadpack: missing distfile quadpack-20001130.tar.gz

Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden).  All existing
SHA1 digests retained for now as an audit trail.
   2013-12-07 20:32:48 by David A. Holland | Files touched by this commit (3)
Log message:
Create wildcard NAMESPACE file; fixes build with latest R
   2012-04-15 16:48:26 by Brook Milligan | Files touched by this commit (2) | Package updated
Log message:
Update to PHYLOGR v1.0.7, add LICENSE and regularize package files.