./math/R-RcppEigen, Rcpp integration for the Eigen templated linear algebra library

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Branch: CURRENT, Version: 0.3.3.9.1, Package name: R-RcppEigen-0.3.3.9.1, Maintainer: pkgsrc-users

R and Eigen integration using Rcpp. Eigen is a C++ template library
for linear algebra: matrices, vectors, numerical solvers and related
algorithms. It supports dense and sparse matrices on integer,
floating point and complex numbers, decompositions of such matrices,
and solutions of linear systems. Its performance on many algorithms
is comparable with some of the best implementations based on Lapack
and level-3 BLAS. The RcppEigen package includes the header files
from the Eigen C++ template library (currently version 3.2.2).


Required to run:
[lang/g95] [math/R] [devel/R-Rcpp]

Required to build:
[pkgtools/cwrappers]

Master sites: (Expand)


Version history: (Expand)


CVS history: (Expand)


   2021-10-26 12:56:13 by Nia Alarie | Files touched by this commit (458)
Log message:
math: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 16:28:36 by Nia Alarie | Files touched by this commit (458)
Log message:
math: Remove SHA1 hashes for distfiles
   2021-01-03 11:04:58 by Makoto Fujiwara | Files touched by this commit (2) | Package updated
Log message:
(math/R-RcppEigen) Updated 3.3.5.0 to 3.3.9.1 (make test fails for now)

2020-12-17  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Version, Date): CRAN Release 0.3.3.9.1 (following
	coordinated update of reverse dependency StanHeaders)
	* inst/NEWS.Rd: Release 0.3.3.9.1

2020-12-14  Dirk Eddelbuettel  <edd@debian.org>

	* .github/workflows/ci.yaml: Add CI runner using r-ci
	* README.md: Add new badge

2020-12-05  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Version, Date): Release 0.3.3.9.0

	* inst/include/Eigen: Upgraded to Eigen 3.3.9
	* inst/include/unsupported/Eigen: Idem
	* patches/eigen-3.3.9.diff: Carried local CRAN patches forward

	* .travis.yml: Switch to r-ci using focal and bspm

	* README.md: Updated URLs to https and/or redirect location
	* inst/CITATION: Idem
	* man/RcppEigen-package.Rd: Idem
	* man/fastLm.Rd: Idem

2020-08-16  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: Add JSS badge

2020-03-29  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: Added commit badge, edited

2020-01-22  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: README.md: Add a Debian badge

2019-11-16  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Version, Date): Release 0.3.3.7.0

	* inst/include/Eigen: Upgraded to Eigen 3.3.7
	* inst/include/unsupported/Eigen: Idem
	* patches/eigen-3.3.7.diff: Carried local CRAN patches forward

2019-11-01  Dirk Eddelbuettel  <edd@debian.org>

	* R/unit.test.R (compile_unit_tests): Removed as no longer needed

2019-10-31  Dirk Eddelbuettel  <edd@debian.org>

	* inst/tinytest/test_transform.R: Switch from RUnit to tinytest
	* inst/tinytest/test_wrap.R: Idem

	* inst/tinytest/cpp/transform.cpp: Added using Rcpp Attributes
	* inst/tinytest/cpp/wrap.cpp: Idem

	* inst/tinytest/cpp/sparse.cpp: More idiomatic Eigen code
	* inst/tinytest/test_sparse.R: Idem

	* .editorconfig: Added

2019-10-30  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Suggests): Switch from RUnit to tinytest
	* .travis.yml (install): Ditto

	* tests/tinytest.R: Converted to tinytest

        * test_sparse.R: Converted to tinytest
	* cpp/sparse.cpp: Added using Rcpp Attributes

2019-10-29  Dirk Eddelbuettel  <edd@debian.org>

        * test_fastLm.R: Converted to tinytest
        * test_RcppEigen.R: Idem
        * test_solution.R: Idem

	* cpp/rcppeigen.cpp: Added using Rcpp Attributes
        * cpp/solution.cpp: Idem

2019-10-28  Dirk Eddelbuettel  <edd@debian.org>

	* tests/tinytest.R: Renamed from tests/doRUnit.R
	* inst/tinytest/test_fastLm.R: Renamed from inst/unitTests/runit*
	* inst/tinytest/test_RcppEigen.R: Idem
	* inst/tinytest/test_solution.R: Idem
	* inst/tinytest/test_sparse.R: Idem
	* inst/tinytest/test_transform.R: Idem
	* inst/tinytest/test_wrap.R: Idem

2019-10-13  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: Added CRAN + BioConductor badges for reverse depends,
	add StackOverflow badge to recommend help searches under 'Rcpp'

	* DESCRIPTION (Version, Date): Roll minor version

	* R/RcppEigen.package.skeleton.R (RcppEigen.package.skeleton): Test for
	example_code outside of haveKitten test; remove force argument if unused

2019-05-24  Dirk Eddelbuettel  <edd@debian.org>

	* vignettes/RcppEigen-Introduction.Rnw: Update vignette to use
	RcppEigen:::eigen_version() instead of .Call()

2019-03-29  Dirk Eddelbuettel  <edd@debian.org>

	* inst/skeleton/rcppeigen_hello_world.cpp: Rework first example to
	not rely on Eigen RNG which R CMD check would complain about.

2019-02-16  James Joseph Balamuta <balamut2@illinois.edu>

	* R/runit.RcppEigen.R: Removed listing RcppEigen in Imports during
	skeleton package creation.
   2019-08-08 21:53:58 by Brook Milligan | Files touched by this commit (189) | Package updated
Log message:
Update all R packages to canonical form.

The canonical form [1] of an R package Makefile includes the
following:

- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
  needed), and CATEGORIES.

- HOMEPAGE is not present but defined in math/R/Makefile.extension to
  refer to the CRAN web page describing the package.  Other relevant
  web pages are often linked from there via the URL field.

This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.

[1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
   2018-07-28 16:40:53 by Brook Milligan | Files touched by this commit (126)
Log message:
Remove MASTER_SITES= from individual R package Makefiles.

Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES.  Consequently, it is redundant for the individual
packages to do the same.  Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.
   2018-03-09 21:27:07 by Min Sik Kim | Files touched by this commit (2)
Log message:
math/R-RcppEigen: Update to 0.3.3.4.0

Changes:
- Updated to version 3.3.4 of Eigen
- Condition long long use on C++11.
- Pragmas for g++ & clang to suppress diagnostics messages are
  disabled per CRAN Policy; use -Wno-ignored-attributes to quieten.
   2018-01-22 04:00:45 by Wen Heping | Files touched by this commit (1)
Log message:
Add buildlink3.mk
   2018-01-22 03:25:48 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 0.3.3.3.1
Add blas and lapack as DEPENDS

Upstream changes:
2017-11-19  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Version, Date): Release 0.3.3.3.1

	* R/inline.R: Use '::' not ':::' for Rcpp.plugin.maker

2017-08-26  Dirk Eddelbuettel  <edd@debian.org>

	* .travis.yml (before_install): Use https for curl fetch

2017-06-06  Yu Gong  <armgong@yahoo.com>

	* inst/include/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h:
	Also permit compilation under Haiku-OS

2017-05-28  Dirk Eddelbuettel  <edd@debian.org>

	* inst/examples/lmBenchmark.R (do_bench): Remove spurious argument in
	call to RcppEigen:::Eigen_SSE() (cf github issue #44)

2017-04-29  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION: Release 0.3.3.3.0

	[ which again owes a very big thank you to Yixuan for doing the work! ]

2017-04-27  Dirk Eddelbuettel  <edd@debian.org>

	* .travis.yml: Switch to using run.sh for Travis CI

2017-04-27  Yixuan Qiu  <yixuan.qiu@cos.name>

	[ In RcppEigen 0.3.3.* branch ]

	* inst/include/Eigen/src/Core/arch/CUDA/Half.h: Fixed compiler warning
	on 'long long' type in C++ 98 mode

2017-03-14  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Version, Date): Release 0.3.2.9.1

	* src/init.c (R_init_RcppEigen): Call R_registerRoutines()
	and R_useDynamicSymbols()

	* NAMESPACE: Use .registration=TRUE on useDynLib

	* R/fastLm.R (fastLmPure): Remove erroneous fourth argument from .Call

2017-03-13  Martin Maechler  <maechler@r-project.org>

	* inst/include/RcppEigenCholmod.h: Synchronize with Matrix package

2017-02-21  Yixuan Qiu  <yixuan.qiu@cos.name>

	[ In RcppEigen 0.3.3.* branch ]

	* inst/include/Eigen: Updated to release 3.3.3 of Eigen
	* inst/include/unsupported: Idem
	* DESCRIPTION: Idem
	* README.md: Idem

2017-01-20  Yixuan Qiu  <yixuan.qiu@cos.name>

	[ In RcppEigen 0.3.3.* branch ]

	* inst/include/Eigen: Updated to release 3.3.2 of Eigen
	* inst/include/unsupported: Idem
	* DESCRIPTION: Idem
	* README.md: Idem

	* inst/unitTests/runit.RcppEigen.R, inst/unitTests/runit.sparse.R:
	Explicitly convert matrix size to `double` type such that Rcpp can
	properly return the value to R, thanks to ChingChuan and Dirk

2017-01-20  ChingChuan Chen  <zw12356@gmail.com>

	[ In RcppEigen 0.3.3.* branch ]

	* inst/include/Eigen: Updated to release 3.3.1 of Eigen
	* inst/include/unsupported: Idem
	* DESCRIPTION: Idem

	* inst/examples/lmBenchmark.R: Fixed function names

2016-12-22  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (URL, BugReports): Added / updated

2016-11-12  Yixuan Qiu  <yixuan.qiu@cos.name>

	[ In RcppEigen 0.3.3.* branch ]

	* inst/include/Eigen: Updated to release 3.3.0 of Eigen
	* inst/include/unsupported: Idem
	* DESCRIPTION: Idem
	* README.md: Idem

	* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h:
	Added exporters for the new Map<SparseMatrix<T> > type
	* inst/unitTests/runit.sparse.R: Unit tests for the new type

2016-08-20  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION: Release 0.3.2.9.0 with big thanks to Yixuan for doing
	the work!

2016-08-19  Yixuan Qiu  <yixuan.qiu@cos.name>

	* inst/include/Eigen: Updated to release 3.2.9 of Eigen

	* README.md: Updated version number and fixed the NOTE from CRAN URL
	check

2016-04-30  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: Expanded

2016-04-28  James Joseph Balamuta <balamut2@illinois.edu>

	* inst/include/RcppEigenWrap.h: Added an exporter class for
	Map::RowVectorX<t> per http://stackoverflow.com/questions/36920689/
	* inst/include/unitTests/runit.RcppEigen.R: Added row exporter unit
	test.