./math/R-hwde, Models and tests for departure from Hardy-Weinberg equilibrium

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Branch: CURRENT, Version: 0.67.3, Package name: R-hwde-0.67.3, Maintainer: pkgsrc-users

Fits models for genotypic disequilibria, as described in Huttley and
Wilson (2000), Weir (1996) and Weir and Wilson (1986). Contrast terms
are available that account for first order interactions between loci.
Also implements, for a single locus in a single population, a
conditional exact test for Hardy-Weinberg equilibrium


Required to run:
[math/R]

Required to build:
[pkgtools/cwrappers]

Master sites: (Expand)

Version history: (Expand)

CVS history: (Expand)


   2024-01-26 22:23:05 by Makoto Fujiwara | Files touched by this commit (2) 
Log message:
(math/R-hwde) Updated 0.66 to 0.67.3, specific ChangeLog/NEWS.md not known
   2021-10-26 12:56:13 by Nia Alarie | Files touched by this commit (458) 
Log message:
math: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 16:28:36 by Nia Alarie | Files touched by this commit (458) 
Log message:
math: Remove SHA1 hashes for distfiles
   2019-08-08 21:53:58 by Brook Milligan | Files touched by this commit (189) | Package updated
Log message:
Update all R packages to canonical form.

The canonical form [1] of an R package Makefile includes the
following:

- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
  needed), and CATEGORIES.

- HOMEPAGE is not present but defined in math/R/Makefile.extension to
  refer to the CRAN web page describing the package.  Other relevant
  web pages are often linked from there via the URL field.

This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.

[1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
   2019-07-31 21:44:49 by Brook Milligan | Files touched by this commit (1) | Package updated
Log message:
R-hwde: update to canonical form of an R package.

Update to the canonical form of an R package and fix the LICENSE
field.
   2018-07-28 16:40:53 by Brook Milligan | Files touched by this commit (126) 
Log message:
Remove MASTER_SITES= from individual R package Makefiles.

Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES.  Consequently, it is redundant for the individual
packages to do the same.  Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.
   2016-04-09 13:14:28 by Wen Heping | Files touched by this commit (2) 
Log message:
Update to 0.67

Upstream changlog:
Changes in hwde version 0.66

CORRECTIONS TO DATA

    o Data in the dataset mendelABC was in error.  Substantial corrections
      have been made.  (Thanks to Boris Igic for drawing the errrors to
      our attention.)
   2015-11-04 00:33:46 by Alistair G. Crooks | Files touched by this commit (262) 
Log message:
Add SHA512 digests for distfiles for math category

Problems found locating distfiles:
	Package dfftpack: missing distfile dfftpack-20001209.tar.gz
	Package eispack: missing distfile eispack-20001130.tar.gz
	Package fftpack: missing distfile fftpack-20001130.tar.gz
	Package linpack: missing distfile linpack-20010510.tar.gz
	Package minpack: missing distfile minpack-20001130.tar.gz
	Package odepack: missing distfile odepack-20001130.tar.gz
	Package py-networkx: missing distfile networkx-1.10.tar.gz
	Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
	Package quadpack: missing distfile quadpack-20001130.tar.gz

Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden).  All existing
SHA1 digests retained for now as an audit trail.