2023-06-02 15:55:59 by Makoto Fujiwara | Files touched by this commit (2) |
Log message: (math/R-statmod) Updated 1.4.36 to 1.5.0 28 Dec 2022: statmod 1.5.0 - New function expectedDeviance() to compute expected values and variances of unit deviances for linear exponential families, using C code written by Lizhong Chen. Add Lizhong Chen as package author. - Replace NAMESPACE exportPattern() with export(). - New argument `n0` for compareGrowthCurves() and CompareTwoGrownCurves() to avoid permutation p-values exactly zero. - Add link to Phipson & Smyth postprint on arXiv in help references for permp() and compareGrowthCurves(). 12 Aug 2022: statmod 1.4.37 - Fix mathematic equations in remlscor.Rd. - Explain simulation method of power.fisher.test() in power.Rd. - Update http to https URLs in elda.Rd, gauss.quad.Rd and gauss.quad.prob.Rd. - Change url to doi for reference in elda.Rd. - Add doi for reference in fitNBP.Rd. |
2021-10-26 12:56:13 by Nia Alarie | Files touched by this commit (458) |
Log message: math: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes |
2021-10-07 16:28:36 by Nia Alarie | Files touched by this commit (458) |
Log message: math: Remove SHA1 hashes for distfiles |
2021-09-18 14:31:31 by Makoto Fujiwara | Files touched by this commit (2) |
Log message: (math/R-statmod) Updated 1.4.32 to 1.4.36 25 Aug 2020: Statmod 1.4.35 - Fix Bug in tweedie(link.power=0) so that the resulting functions $linkinv() and $mu.eta() preserve the attributes of their arguments. 16 Feb 2020: statmod 1.4.34 - Improve the model description provided in the remlscoregamma() help page. - tweedie() now checks whether `var.power` or `link.power` are character strings instead of numeric. If `var.power` is one of the standard family names ("gaussian", "poisson", \ "gamma" or "inverse.gaussian") or `link.power` is one of the standard link functions ("identity","log","inverse") then the \ argument is reset to the corresponding numerical value with a message, otherwise an informative error message is given. - Cleaning up of internal code to avoid partial matching of function arguments, attributes or list component names. The automatic package tests are now run with the warnPartialMatchArgs, warnPartialMatchAttr and warnPartialMatchDollar options all set to TRUE. 4 Jan 2020: statmod 1.4.33 - The components returned by mixedModel2Fit() relating to fixed coefficients are now documented explicitly. The help page has been corrected to refer to the argument `only.varcomp` instead of `fixed.estimates`. The vector of `reml.residuals` is no longer part of the output. - The test file has been slightly revised using zapsmall() so ensure that the test output file remains correct for R with ATLAS BLAS. |
2019-08-08 21:53:58 by Brook Milligan | Files touched by this commit (189) | |
Log message: Update all R packages to canonical form. The canonical form [1] of an R package Makefile includes the following: - The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as needed), and CATEGORIES. - HOMEPAGE is not present but defined in math/R/Makefile.extension to refer to the CRAN web page describing the package. Other relevant web pages are often linked from there via the URL field. This updates all current R packages to this form, which will make regular updates _much_ easier, especially using pkgtools/R2pkg. [1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html |
2018-07-28 16:40:53 by Brook Milligan | Files touched by this commit (126) |
Log message: Remove MASTER_SITES= from individual R package Makefiles. Each R package should include ../../math/R/Makefile.extension, which also defines MASTER_SITES. Consequently, it is redundant for the individual packages to do the same. Package-specific definitions also prevent redefining MASTER_SITES in a single common place. |
2017-12-02 13:00:35 by Wen Heping | Files touched by this commit (2) |
Log message: Update to 1.4.30 Upstream changes: 16 June 2017: statmod 1.4.30 - Bug fix to qinvgauss(). In some case the gamma approximation used for small right tail probabilities was taking the initial value outside the domain of convergence. 27 February 2017: statmod 1.4.29 - rinvgauss() now accurately handles large or infinite values for the mean or dispersion. 26 February 2017: statmod 1.4.28 - R_registerRoutines is now used to register the Fortran subroutine gaussq2. - pinvgauss() and qinvgauss() now use a gamma approximation when the coefficient of variation is very small. 17 December 2016: statmod 1.4.27 - qinvgauss() now supports mean=Inf. |
2016-11-06 03:54:08 by Wen Heping | Files touched by this commit (2) | |
Log message: Update to 1.4.26 Upstream changes: 28 August 2016: statmod 1.4.26 - Fortran function gaussq2 updated to Fortran 77. 5 August 2016: statmod 1.4.25 - Add CITATION file. - pinvgauss() now uses an asymptotic approximation to compute right tail probabilities for extreme large quantiles. This allows it to give correct right tail probabilities for virtually any quantile. - Fix to qinvgauss() to avoid NA values when computing extreme tail quantiles where the inverse Gaussian density is subject to floating underflow. - Bug fix to qresiduals() and qresid.invgauss() for the inverse Guassian distribution. |