./wip/manatee, Web-based gene evaluation and genome annotation tool

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Branch: CURRENT, Version: 1.8.4.1nb3, Package name: manatee-1.8.4.1nb3, Maintainer: pkgsrc-users

Manatee is a web-based gene evaluation and genome annotation tool.
Manatee can store and view annotation for prokaryotic and eukaryotic
genomes. The Manatee interface allows biologists to quickly identify
genes and make high quality functional assignments, such as GO
classifications, using search data, paralogous families, and
annotation suggestions generated from automated analysis.
Manatee is written in Perl and run under the CGI area of a web server,
such as Apache. Manatee also requires at least one Mysql (or Sybase)
project database and associated search files. The project databases
use a data model and schema developed at TIGR for representing
Eukaryotic or Prokaryotic data.


Required to run:
[textproc/p5-XML-Simple] [textproc/p5-XML-Parser] [www/p5-CGI] [www/p5-HTML-Template] [graphics/gd] [graphics/p5-GDGraph] [graphics/p5-GD] [graphics/p5-GDTextUtil] [databases/p5-DBI] [databases/p5-DBD-mysql] [databases/p5-DBD-Sybase] [lang/perl5] [devel/p5-Date-Manip] [devel/p5-Tree-DAG_Node] [databases/mysql57-client] [databases/mysql57-server]

Required to build:
[www/apache24] [pkgtools/cwrappers]

Master sites:

RMD160: 0a94e4112ce96609925bd022fad51f2b062698f3
Filesize: 1192.425 KB

Version history: (Expand)

CVS history: (Expand)


   2014-04-02 20:38:12 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
Use mk/mysql.buildlink3.mk to get MYSQL_VERSION_DEFAULT.
   2014-04-02 00:13:25 by Aleksej Saushev | Files touched by this commit (1) 
Log message:
Depend on default MySQL server instead of removed MySQL 5.0
   2013-11-24 11:00:21 by Thomas Klausner | Files touched by this commit (5) 
Log message:
Comment out p5-Storable dependency; included in perl since 5.7.3.
   2012-10-03 17:09:47 by Aleksej Saushev | Files touched by this commit (124) 
Log message:
Drop superfluous PKG_DESTDIR_SUPPORT, "user-destdir" is default these days.
Mark packages that don't or might probably not have staged installation.
   2010-06-14 00:47:10 by Thomas Klausner | Files touched by this commit (235) 
Log message:
Bump PKGREVISION for libpng shlib name change.
Also add some patches to remove use of deprecated symbols and fix other
problems when looking for or compiling against libpng-1.4.x.
   2010-01-18 10:38:16 by Thomas Klausner | Files touched by this commit (204) 
Log message:
Second try at recursive PKGREVISION bump for jpeg shlib major bump (jpeg-8).
   2009-10-11 12:44:55 by Thomas Klausner | Files touched by this commit (222) 
Log message:
Remove obsolete @dirrm lines.
   2008-01-13 00:24:56 by Thomas Klausner | Files touched by this commit (1) 
Log message:
Depend on mysql5-server instead of removed mysql-server.