./wip/trinity, Assembles transcript sequences from Illumina RNA-Seq data

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Branch: CURRENT, Version: 2.8.3, Package name: trinity-2.8.3, Maintainer: pkgsrc-users

Trinity represents a novel method for the efficient and robust de novo
reconstruction of transcriptomes from RNA-seq data. Trinity combines three
independent software modules: Inchworm, Chrysalis, and Butterfly, applied
sequentially to process large volumes of RNA-seq reads.


Required to run:
[sysutils/coreutils] [wip/bowtie] [wip/parafly] [wip/htslib] [wip/jellyfish2] [wip/bowtie2] [wip/slclust] [wip/rsem] [wip/p5-transdecoder] [wip/fastool] [biology/ncbi-blast+] [lang/python37] [wip/salmon]

Required to build:
[pkgtools/cwrappers]

Master sites:

RMD160: 92a7a81b15a220ff70f3ff5cb3fb80617d041c9d
Filesize: 21198.99 KB

Version history: (Expand)

CVS history: (Expand)


   2015-01-28 23:10:06 by Jason Bacon | Files touched by this commit (1) 
Log message:
Add perl to USE_TOOLS
   2015-01-28 17:44:31 by Jason Bacon | Files touched by this commit (9) 
Log message:
Import trinity-2014.04.13 as wip/trinity.

RNA sequence de novo assembly tool.

WWW:	http://port.home.page/