./biology/py-biopython, Python libraries for computational molecular biology

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Branch: CURRENT, Version: 1.74nb1, Package name: py37-biopython-1.74nb1, Maintainer: pkgsrc-users

The Biopython package contains high-quality, reusable modules and
scripts written in Python to make it as easy as possible to use Python
for bioinformatics. The Biopython includes the follwing: the ability
to parse bioinformatics files into python utilizable data structures,
including support for the formats such as Blast output, Clustalw,
FASTA, GenBank, PubMed and Medicine, various Expasy files, SCOP,
Rebase, UniGene, and SwissProt.


Required to run:
[devel/py-setuptools] [math/py-numpy] [lang/python37]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: 75b6b7f6f70220c984bc55d63145fea21b84387b
RMD160: c9b2130d895ecea30e37bdd71524ad7c6ea1db2d
Filesize: 15751.228 KB

Version history: (Expand)


CVS history: (Expand)


   2020-10-12 23:52:05 by Jason Bacon | Files touched by this commit (87) | Package updated
Log message:
math/blas, math/lapack: Install interchangeable BLAS system

Install the new interchangeable BLAS system created by Thomas Orgis,
currently supporting Netlib BLAS/LAPACK, OpenBLAS, cblas, lapacke, and
Apple's Accelerate.framework.  This system allows the user to select any
BLAS implementation without modifying packages or using package options, by
setting PKGSRC_BLAS_TYPES in mk.conf. See mk/blas.buildlink3.mk for details.

This commit should not alter behavior of existing packages as the system
defaults to Netlib BLAS/LAPACK, which until now has been the only supported
implementation.

Details:

Add new mk/blas.buildlink3.mk for inclusion in dependent packages
Install compatible Netlib math/blas and math/lapack packages
Update math/blas and math/lapack MAINTAINER approved by adam@
OpenBLAS, cblas, and lapacke will follow in separate commits
Update direct dependents to use mk/blas.buildlink3.mk
Perform recursive revbump
   2020-01-26 18:32:28 by Roland Illig | Files touched by this commit (981)
Log message:
all: migrate homepages from http to https

pkglint -r --network --only "migrate"

As a side-effect of migrating the homepages, pkglint also fixed a few
indentations in unrelated lines. These and the new homepages have been
checked manually.