./math/py-scipy, Scientific Algorithms Library for Python

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Branch: CURRENT, Version: 1.6.3, Package name: py38-scipy-1.6.3, Maintainer: markd

SciPy is an open source library of scientific tools for Python. SciPy
supplements the popular Numeric module, gathering a variety of high level
science and engineering modules together as a single package.

SciPy includes modules for graphics and plotting, optimization, integration,
special functions, signal and image processing, genetic algorithms, ODE
solvers, and others.

Required to run:
[math/fftw] [math/lapack] [math/blas] [math/py-numpy] [devel/py-cython] [lang/gcc7] [lang/python37]

Required to build:

Master sites:

SHA1: 7de2a7d7bfce73111c1d8aa3248bec089127e48c
RMD160: f0f3d546f473233fe8073582d954153207bf4fb1
Filesize: 26550.769 KB

Version history: (Expand)

CVS history: (Expand)

   2021-05-03 19:55:02 by Adam Ciarcinski | Files touched by this commit (2) | Package updated
Log message:
py-scipy: updated to 1.6.3

Issues closed for 1.6.3
* Divide by zero in distance.yule
* prerelease_deps failures
* spatial rotation failure in (1.6.3) wheels repo (ARM64)

Pull requests for 1.6.3
* fix the matplotlib warning emitted during builing docs
* Divide by zero in yule dissimilarity of constant vectors
* deprecated np.typeDict
* substitute np.math.factorial with math.factorial
* add random seeds in Rotation module
   2021-04-20 23:39:25 by Dr. Thomas Orgis | Files touched by this commit (1)
Log message:
math/py-scipy: drop direct BLAS dependency, used via math/py-numpy
   2021-04-09 16:41:35 by Tobias Nygren | Files touched by this commit (14)
Log message:
revert wrong fix for py-scipy python 3.6 deprecation, fix properly
   2021-04-06 15:11:17 by Nia Alarie | Files touched by this commit (1)
Log message:
py-scipy: unbreak bulk builds

if you mark a package incompatible with python version X, you also
need to mark any dependent packages incompatible with version X
   2021-04-06 11:00:42 by Patrick Welche | Files touched by this commit (1) | Package updated
Log message:
py-scipy: ride update and chmod some files to avoid PKG_DEVELOPER warnings
   2021-04-05 21:26:07 by Tobias Nygren | Files touched by this commit (3) | Package updated
Log message:
py-scipy: update to 1.6.2

Highlights of this release

scipy.ndimage improvements: Fixes and ehancements to boundary extension
  modes for interpolation functions. Support for complex-valued inputs in many
  filtering and interpolation functions. New grid_mode option for
  scipy.ndimage.zoom to enable results consistent with scikit-image's
scipy.optimize.linprog has fast, new methods for large, sparse problems
  from the HiGHS library.
scipy.stats improvements including new distributions, a new test, and
  enhancements to existing distributions and tests

Deprecated features

scipy.spatial changes
  Calling KDTree.query with k=None to find all neighbours is deprecated.
  Use KDTree.query_ball_point instead.
distance.wminkowski was deprecated; use distance.minkowski and supply
  weights with the w keyword instead.
Backwards incompatible changes
  Using scipy.fft as a function aliasing numpy.fft.fft was removed after
  being deprecated in SciPy 1.4.0. As a result, the scipy.fft submodule
  must be explicitly imported now, in line with other SciPy subpackages.
  scipy.signal changes
The output of decimate, lfilter_zi, lfiltic, sos2tf, and
  sosfilt_zi have been changed to match numpy.result_type of their inputs.
The window function slepian was removed.
The frechet_l and frechet_r distributions were removed.
   2020-10-12 23:52:05 by Jason Bacon | Files touched by this commit (87) | Package updated
Log message:
math/blas, math/lapack: Install interchangeable BLAS system

Install the new interchangeable BLAS system created by Thomas Orgis,
currently supporting Netlib BLAS/LAPACK, OpenBLAS, cblas, lapacke, and
Apple's Accelerate.framework.  This system allows the user to select any
BLAS implementation without modifying packages or using package options, by
setting PKGSRC_BLAS_TYPES in mk.conf. See mk/blas.buildlink3.mk for details.

This commit should not alter behavior of existing packages as the system
defaults to Netlib BLAS/LAPACK, which until now has been the only supported


Add new mk/blas.buildlink3.mk for inclusion in dependent packages
Install compatible Netlib math/blas and math/lapack packages
Update math/blas and math/lapack MAINTAINER approved by adam@
OpenBLAS, cblas, and lapacke will follow in separate commits
Update direct dependents to use mk/blas.buildlink3.mk
Perform recursive revbump
   2020-08-04 03:16:19 by Tobias Nygren | Files touched by this commit (3) | Package updated
Log message:
py-scipy: update to 1.5.2

Done to fix build w/ gfortran 10. "make test" was mostly OK except for
three tests that returned nan where inf was expected ...

Highlights of this release:
  wrappers for more than a dozen new LAPACK routines are now available
  in scipy.linalg.lapack
  Improved support for leveraging 64-bit integer size from linear algebra
  addition of the probability distribution for two-sided one-sample
  Kolmogorov-Smirnov tests

New features:
  Too many; see release notes at github.

Backwards incompatible changes:
  The output signatures of ?syevr, ?heevr have been changed from
  w, v, info to w, v, m, isuppz, info
  The order of output arguments w, v of <sy/he>{gv, gvd, gvx} is
  The output length of scipy.signal.upfirdn has been corrected, resulting
  outputs may now be shorter for some combinations of up/down ratios and
  input signal and filter lengths.
  scipy.signal.resample now supports a domain keyword argument for
  specification of time or frequency domain input.