./math/py-scipy, Scientific Algorithms Library for Python

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Branch: CURRENT, Version: 1.14.1, Package name: py312-scipy-1.14.1, Maintainer: pkgsrc-users

SciPy is an open source library of scientific tools for Python. SciPy
supplements the popular Numeric module, gathering a variety of high level
science and engineering modules together as a single package.

SciPy includes modules for graphics and plotting, optimization, integration,
special functions, signal and image processing, genetic algorithms, ODE
solvers, and others.


Required to run:
[math/fftw] [math/lapack] [math/blas] [math/py-numpy] [devel/py-cython] [lang/gcc7] [lang/python37]

Required to build:
[pkgtools/cwrappers]

Master sites:

Filesize: 57246.635 KB

Version history: (Expand)


CVS history: (Expand)


   2024-10-14 08:46:10 by Thomas Klausner | Files touched by this commit (325)
Log message:
*: clean-up after python38 removal
   2024-08-21 12:11:44 by Adam Ciarcinski | Files touched by this commit (3) | Package updated
Log message:
py-scipy: updated to 1.14.1

Issues closed for 1.14.1

BUG: doccer: \`test_decorator\` fails with Python 3.13 due to...
BUG: open_memstream unavailable with glibc >= 2.10 + C99
ENH: 3.13 wheels
BUG: spsolve prints "dgstrf info" to stdout on singular matrices
BUG: \`special.pro_rad1\`: incorrect results
BUG: sparse: \`hstack/vstack\` between a sparse and ndarray breaks...
MAINT: \`cluster\`/\`stats\`: array API test failures in main
BUG: unable to securely deploy app as scipy 1.14.0 requires write...
BUG: signal: crash in \`signaltools\` on free-threaded Python,...
CI: documentation build failing?
BUG: \`fft.hfftn\` fails on list inputs
BUG: Files in SuperLU under LGPL license
BUG: io/scipy.sparse.csgraph: refguide check failure in main
DOC: \`sampling_tdr.rst\` failing in CircleCI smoke-tutorials...
BUG: dtype changed for argument to \`rv_discrete._pmf\`
BUG: odr: pickling is not possible
DOC: build failing in CI
BLD, CI: Cirrus 3.13 wheels?

Pull requests for 1.14.1

BLD: make cp313 wheels [wheel build]
REL, MAINT: prep for 1.14.1
BUG: special: Fixes for pro_rad1
BUG: special: remove type punning to avoid warnings in LTO builds
MAINT: uarray: fix typo in \`small_dynamic_array.h\`
MAINT: adapt to array-api-strict 2.0
BLD: Enable \`open_memstream()\` on newer glibc
MAINT: Unskip \`scipy.misc.test.test_decorator\` for Python 3.13+
DOC: add release note for 1.14 sparse section about sparse array...
BUG: sparse: fix 1D for vstack/hstack and Improve 1D error msgs...
BUG: signal: fix crash under free-threaded CPython in medfilt2d
BUG: sparse.linalg: Update \`SuperLU\` to fix unfilterable output...
DOC: Fix type of \`\`html_sidebars\`\` value in \`\`conf.py\`\`
BUG: fft: fix array-like input
BUG: sparse: fix failing doctests in io and csgraph that print...
DOC: stats: silence the doctest error
MAINT: sparse.linalg: update \`SuperLU/colamd.c\` to fix license...
BUG: stats: adapt to \`np.floor\` type promotion removal
MAINT: \`stats.bartlett\`: ensure statistic is non-negative
CI: Update to cibuildwheel 2.20.0
BUG: odr: fix pickling
DOC: Don't use Sphinx 8.0.0 until gh-21323 is resolved.
BUG: sparse: Fix 1D specialty hstack codes
MAINT: special: Accommodate changed integer handling in NumPy...
BLD: cp313 wheels on \`manylinux_aarch64\`
   2024-08-06 11:46:17 by Adam Ciarcinski | Files touched by this commit (1)
Log message:
py-scipy: bump GCC_REQD
   2024-07-31 20:16:11 by Adam Ciarcinski | Files touched by this commit (1)
Log message:
py-scipy: remove unused patch
   2024-07-31 20:15:38 by Adam Ciarcinski | Files touched by this commit (9) | Package updated
Log message:
py-scipy: updated to 1.14.0

SciPy 1.14.0 is the culmination of 3 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and better
documentation. There have been a number of deprecations and API changes
in this release, which are documented below. All users are encouraged to
upgrade to this release, as there are a large number of bug-fixes and
optimizations. Before upgrading, we recommend that users check that
their own code does not use deprecated SciPy functionality (to do so,
run your code with python -Wd and check for DeprecationWarning s).
Our development attention will now shift to bug-fix releases on the
1.14.x branch, and on adding new features on the main branch.
   2024-06-12 10:57:43 by Adam Ciarcinski | Files touched by this commit (2) | Package updated
Log message:
py-scipy: updated to 1.13.1

Issues closed for 1.13.1

BUG: \`scipy.ndimage.value_indices\` returns empty dict for \`intc\`/\`uintc\` \ 
dtype on Windows
DOC, MAINT: .jupyterlite.doit.db shows up untracked
DOC: optimize.root(method='lm') option
BUG: csr_array can no longer be initialized with 1D array
BUG: \`TestEig.test_falker\` fails on windows + MKL as well as...
BUG: Cannot find \`OpenBLAS\` on Cygwin
BUG: special.spherical_in: derivative at \`z=0, n=1\` incorrect
BUG: \`eigh\` fails for size 1 array with driver=evd
BUG: warning from \`optimize.least_squares\` for astropy with...
BUG: spatial: error in \`Rotation.align_vectors()\` with an infinite...
MAINT, TST: two types of failures observed on maintenance/1.13.x...
BUG: scipy.special.factorial2 doesn't handle \`uint32\` dtypes
BUG: scipy.stats.wilcoxon in 1.13 fails on 2D array with nan...
BUG: scipy.spatial.Delaunay, scipy.interpolate.LinearNDInterpolator...
BUG: stats.yulesimon: incorrect kurtosis values
BUG: incorrect origin tuple handling in ndimage \`minimum_filter\`...
BUG: spatial: \`Rotation.align_vectors()\` incorrect for anti-parallel...
BUG: sparse matrix creation in 1.13 with indices not summing...
BUG: stats.zipf: incorrect pmf values
CI: scipy installation failing in umfpack tests

Pull requests for 1.13.1

MAINT: added doc/source/.jupyterlite.doit.db to .gitignore See...
BUG: sparse: align dok_array.pop() to dict.pop() for case with...
BUG: sync pocketfft again
REL, MAINT: prep for 1.13.1
DOC: optimize: fix wrong optional argument name in \`root(method="lm")\`.
DOC: add missing deprecations from 1.13.0 release notes
MAINT/DOC: fix syntax in 1.13.0 release notes
BUG: sparse: Clean up 1D input handling to sparse array/matrix...
DOC: remove spurious backtick from release notes
BUG: linalg: fix ordering of complex conj gen eigenvalues
TST: tolerance bumps for the conda-forge builds
TST: compare absolute values of U and VT in pydata-sparse SVD...
BUG: Include Python.h before system headers.
BUG: linalg: fix eigh(1x1 array, driver='evd') f2py check
BUG: \`spherical_in\` for \`n=0\` and \`z=0\`
BLD: Fix error message for f2py generation fail
TST: Adapt to \`__array__(copy=True)\`
BLD: Move Python-including files to start of source.
REV: 1.13.x: revert changes to f2py and tempita handling in meson.build...
update openblas to 0.3.27
BUG: Fix error with 180 degree rotation in Rotation.align_vectors()...
MAINT: optimize.linprog: fix bug when integrality is a list of...
MAINT: stats.wilcoxon: fix failure with multidimensional \`x\`...
MAINT: lint: temporarily disable UP031
BUG: handle uint arrays in factorial{,2,k}
BUG: prevent QHull message stream being closed twice
MAINT/DEV: lint: disable UP032
BUG: fix Vor/Delaunay segfaults
BUG: ndimage.value_indices: deal with unfixed types
BUG: ndimage: fix origin handling for \`{minimum, maximum}_filter\`
MAINT: stats.yulesimon: fix kurtosis
BUG: sparse: Fix summing duplicates for CSR/CSC creation from...
BUG: stats: Fix \`zipf.pmf\` and \`zipfian.pmf\` for int32 \`k\`
CI: pin Python for MacOS conda
   2024-06-04 22:46:45 by Mark Davies | Files touched by this commit (1)
Log message:
py-scipy: drop maintainership
   2024-05-05 21:02:05 by Thomas Klausner | Files touched by this commit (1)
Log message:
py-scipy: fix build