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wip/py-pysam,
Python module for reading, manipulating and writing genomic data sets
Branch: CURRENT,
Version: 0.15.1,
Package name: py37-pysam-0.15.1,
Maintainer: baconpysam is a lightweight wrapper of the htslib C-API and provides facilities to
read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
to the command line functionality of the samtools and bcftools packages. The
module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using
cython and a high-level API for convenient access to the data within standard
genomic file formats.
Required to run:[
devel/py-setuptools] [
devel/py-cython] [
biology/htslib] [
lang/python37]
Required to build:[
pkgtools/cwrappers]
Master sites:
SHA1: e44068afc7520d211f4537873a963f16a6e53a8f
RMD160: f44ed399f80325bb084d254a3d16d97c6bc25f0f
Filesize: 3144.879 KB
Version history: (Expand)
- (2020-09-29) Package has been reborn
- (2020-09-29) Package deleted from pkgsrc
- (2020-01-02) Package has been reborn
- (2019-12-17) Package deleted from pkgsrc
- (2019-12-15) Package has been reborn
- (2019-12-14) Package deleted from pkgsrc