Navigation:

Restricting search to CURRENT branch. (Show all branches)

wip/herwig | Monte Carlo package for simulating Hadron Emission Reactions | |

wip/aokell | AOKell is a Java implementation of the Fractal component model | |

wip/py-ecspy | Framework for creating evolutionary computations in Python | |

wip/depsolver | Multimaterial 3D electrostatic solver | |

wip/py-julio | Python Implementation of the Fractal Specification | |

wip/py-datarray | NumPy arrays with named axes and named indices | |

wip/py-gsl | Python interface for the GNU scientific library | |

wip/libscscp | Library of the Symbolic Computation Software Composibility Protocol | |

wip/nauty | Brendan McKays graph isomorphism tester | |

wip/aten | Aten is a tool to create, edit, and visualise coordinates | |

wip/why3 | Why3 is a platform for deductive program verification | |

wip/py-algopy | Taylor Arithmetic Computation and Algorithmic Differentiation | |

wip/py-imread | Imread: Image reading library | |

wip/py-lapack | PyLapack is a python interface to LAPACK | |

wip/spatt | Statistics for Patterns | |

wip/hepmc | C++ Event Record for Monte Carlo Generators | |

wip/py-clics | Clone detector and GUI | |

wip/py-yt | Analyzing and visualizing astrophysical simulation output | |

wip/py-gnm | Python Gaussian Network Model | |

wip/py-fitsarray | Ndarray subclass with a fits header | |

wip/pilemc-svn | Tool for the simulation of pile-up events at HepMC level | |

wip/py-pulp | LP modeler in Python | |

wip/py-pyecm | Integer factorization with the Elliptic Curve Method (ECM) | |

wip/py-pymvpa | Multivariate pattern analysis | |

wip/py-meigo | Python wrapper of MEIGOR, a R optimisation package | |

wip/py-chaintipy | CHIANTI atomic database for astrophysical spectroscopy | |

wip/py-mdanalysis | Library to analyze and manipulate molecular dynamics trajectories | |

wip/py-chebpy | Chebyshev polynomial based spectral methods of PDEs | |

wip/gts | GTS stands for the GNU Triangulated Surface Library | |

wip/feynedit | Tool for drawing Feynman diagrams | |

wip/py-pyamg | Algebraic multigrid solvers in Python | |

wip/py-topkapi | TOPKAPI hydrological model in Python | |

wip/atompaw | Projector Augmented Wave code for electronic structure calculations | |

wip/py-cvf | Python Computer Vision Framework | |

wip/coxeter | Computer program for the study of Coxeter group theory | |

wip/py-bottleneck | Fast NumPy array functions written in Cython | |

wip/py-aerocalc | Aeronautical Engineering Calculations | |

wip/py-scikits_bvp1lg | Boundary value problem (legacy) solvers for ODEs | |

wip/m4ri | M4RI is a library for fast arithmetic with dense matrices over F2 | |

wip/py-pyentropy | Python module for estimation information theoretic quantities | |

wip/py-quantities | Support for physical quantities with units, based on numpy | |

wip/py-pysph | General purpose Smoothed Particle Hydrodynamics framework | |

wip/ktjet | C++ implementation of the K clustering algorithm | |

wip/dune-geometry | Includes everything related to the DUNE reference elements | |

wip/py-diffpy-structure | Crystal structure container and parsers for structure formats | |

wip/hepmcvisual | Interactive Browser for HepMC events | |

wip/py-django-helmholtz | Framework for creating neuroscience databases | |

wip/py-mmLib | Python Macromolecular Library | |

wip/sympol | SymPol is a C++ tool to work with symmetric polyhedra | |

wip/py-paida | Pure Python scientific analysis package | |

wip/py-smop | Matlab/Octave to Python compiler | |

wip/py-pykit-sci | Collection of python modules for science | |

wip/py-kineticlib | Library for kinetic theory calculations in the multi-temperature | |

wip/alberta | Adaptive hierarchical finite element toolbox | |

wip/py-sciproc | Process scientific multidimensional data | |

wip/py-professor | Parameterisation-based tuning tool for Monte Carlo event generators | |

wip/omega | Optimal Monte-Carlo Event Generation Amplitudes | |

wip/symmetrica | Library for combinatorics | |

wip/py-sparce | Sparse linear algebra extension for Python | |

wip/py-nibabel | Access a multitude of neuroimaging data formats | |

wip/py-wafo | Statistical analysis and simulation of random waves and random loads | |

wip/cspchecker | CSP code type hecker | |

wip/py-astropysics | Astrophysics libraries for Python | |

wip/py-divisi2 | Commonsense Reasoning over Semantic Networks | |

wip/py-pyphant | Workflow modelling app | |

wip/superchic | Monte Carlo Event Generator for Central Exclusive Production | |

wip/gambit | Software Tools for Game Theory | |

wip/libncl | The NEXUS Class Library is a C++ library for parsing NEXUS files | |

wip/libode | Open Dynamics Engine | |

wip/py-gratelpy | Graph theoretic linear stability analysis | |

wip/py-psychopy | Psychology and neuroscience software in python | |

wip/myfitter | Maximum Likelihood Fits in C++ | |

wip/py-sfepy | Simple finite elements in Python | |

wip/py-spfpm | Tools for arithmetic on fixed-point (binary) numbers | |

wip/gfan | Program for computing with Groebner fans | |

wip/ann | Library for Approximate Nearest Neighbor Searching | |

wip/py-pyec | Evolutionary computation package | |

wip/ratpoints | Optimized quadratic sieve algorithm | |

wip/py-scikits_datasmooth | Scikits data smoothing package | |

wip/py-hfk | Computes Heegaard Floer homology for links | |

devel/py-h5py | Python interface to the HDF5 library | |

wip/py-scikits_image | Image processing routines for SciPy | |

wip/py-cinfony | Common API for several cheminformatics toolkits | |

wip/dune-common | Contains the basic classes used by all DUNE modules | |

wip/fastjet | Software package for jet finding in pp and e+e- collisions | |

wip/py-scikits-bvp_solver | Python package for solving two-point boundary value problems | |

wip/py-sdt_metrics | Signal Detection Theory (SDT) metrics for Python | |

wip/py-sphviewer | Framework for rendering particle simulations | |

wip/py-vegas | Tools for adaptive multidimensional Monte Carlo integration | |

wip/py-diffpy_pdffit2 | PDFfit2 - real space structure refinement program | |

wip/frobby | Computations with monomial ideals | |

wip/py-anfft | FFT package for Python, based on FFTW | |

wip/xmds | XMDS is a code generator that integrates equations | |

wip/py-gravipy | Tensor Calculus Package for General Relativity | |

wip/py-otb | Utility functions for scientific numerical computation | |

wip/freefem++ | PDE oriented language using Finite Element Method | |

wip/py-ncomb | Python combinatorics library | |

wip/py-automata | Finite automata for python | |

wip/py-numericalunits | Package that lets you define quantities with units | |

wip/py-rasterio | Fast and direct raster I/O for Python programmers who use Numpy | |

wip/py-lingpy | Python library for automatic tasks in historical linguistics | |

wip/gwyddion | Gtk2 based SPM data visualization and analysis tool | |

wip/linbox | LinBox: exact computational linear algebra | |

wip/py-scikits_optimization | Python module for numerical optimization | |

wip/libginac | The GiNaC symbolic framework | |

wip/tvmet | Tiny Vector and Matrix template library | |

wip/py-oct2py | Python to GNU Octave bridge --> run m-files from python | |

wip/py-mcview | 3D/graph event viewer for high-energy physics event simulations | |

wip/py-piquant | Extending NumPy and SciPy to specification of numbers and arrays | |

wip/lrslib | Enumerate vertices and extreme rays of a convex polyhedron | |

wip/py-utilib_component_core | The PyUtilib Component Architecture | |

wip/py-pysal | Python Spatial Analysis Library | |

wip/py-mdptoolbox | Implementation of Markov Decision Problem algorithms for Python | |

wip/py-decimalpy | Decimal based version of numpy | |

wip/jmol | Jmol: an open-source Java viewer for chemical structures in 3D | |

wip/py-empirical | Emperical Method of Fundamental Solutions solver for Python | |

wip/bkchem | Python based chemical structures editor | |

wip/gsdpdf | Gaunt-Stirling double Parton Distribution Functions | |

wip/py-acq4 | Neurophysiology acquisition and analysis platform | |

wip/py-mystic | Simple interactive inversion analysis framework | |

wip/py-control | Python Control Systems Library | |

wip/py-hamilton | Visualize and control mechanic systems through solving these systems | |

wip/py-irco | International Research Collaboration Graphs | |

wip/py-dexy | Document Automation | |

wip/py-plink | Link Projection Editor | |

wip/py-pydelay | Translates a system of delay differential equations (DDEs) | |

wip/py-seeds | Stochastic Ecological and Evolutionary Dynamics System | |

wip/py-dicom | Read, modify and write DICOM files with python code | |

wip/scimark | Java benchmark for scientific and numerical computing | |

wip/py-pytools | Collection of tools for Python | |

wip/py-scikits_samplerate | Python module for high quality audio resampling | |

wip/sympow | Special values of symmetric power elliptic curve L-functions | |

wip/py-qeutil | Set of utilities for using Quantum-Espresso | |

wip/maloc | Minimal Abstraction Layer for Object-oriented C | |

wip/py-pyqu | PyQu is an extension module for Python to implement quantum algorithms | |

wip/py-repositoryhandler | RepositoryHandler is a python library for handling code repositories | |

wip/py-aipy | Astronomical Interferometry in Python | |

wip/py-spectral | Python module for hyperspectral image processing | |

wip/py-dcpf | Python device communications protocol framework | |

wip/vamp | VAMP is WHIZARDs adaptive multi-channel integrator | |

wip/polymul | Fast multivariate polynomial multiplication in C++ | |

wip/py-zipline | Backtester for financial algorithms | |

wip/py-emmsa | Multivariate Statistical Analysis for Electron Microscopy Data | |

wip/py-raphrase | Linguistics-related library | |

wip/py-rogues | Python and numpy port of Nicholas Highams m*lab test matrices | |

wip/py-sempy | Python implementation of the spectral element method | |

wip/py-scimath | Scientific and Mathematical calculations | |

wip/py-gist | Gist is a scientific graphics library | |

wip/probe | ProBE is an animator for CSP processes | |

wip/picosat | SAT solver with proof and core support | |

wip/py-emcee | The Python ensemble sampling toolkit for affine-invariant MCMC | |

wip/py-spyse | Spyse is a framework and platform for building multi-agent systems | |

wip/py-cito | Generic particle-physics software trigger with flash ADCs | |

wip/py-cytoolz | Cython Toolz High performance functional utilities | |

wip/py-tracks | Analysis tools for Molecular Dynamics and Monte Carlo simulations | |

wip/py-cma | Covariance Matrix Adaptation Evolution Strategy for non-linear | |

wip/py-rf | Receiver function calculation in seismology | |

wip/libbrahe | Heterogeneous C library of interesting numeric functions | |

wip/faast | Library for Fast Arithmetics in Artin-Schreier Towers | |

wip/liboglappth | Support libraries of science/ghemical port | |

wip/py-holoviews | Declarative data structures for building complex visualizations | |

wip/py-lds | Learning and inference for Gaussian linear dynamical systems | |

wip/py-healpy | Healpix tools package for Python | |

wip/libxc | Libxc is the ETSF library of exchange-correlation functionals | |

wip/getdp | General environment for the treatment of discrete problems | |

wip/py-debacl | Density-Based Clustering | |

wip/py-numdifftools | Tools for automatic numerical differentiation | |

wip/pythia6 | Program can be used to generate high-energy-physics events | |

wip/reduze | Program for reducing Feynman Integrals | |

wip/py-quaternionarray | Python package for fast quaternion arrays math | |

wip/polylib | The polyhedral library - long int version | |

wip/py-se | Framework for solving PDEs with FDM using Python | |

wip/py-descartes | Use geometric objects as matplotlib paths and patches | |

wip/py-biskit | Python platform for structural bioinformatics | |

wip/py-bip | Python package for object-oriented bayesian inference | |

wip/py-pykit-shared | Collection of modules shared amongst my other projects | |

wip/py-ruffus | Lightweight python module to run computational pipelines | |

wip/py-decode | Dynamic programming toolkit | |

wip/kstest | Kolmogorov-Smirnov Test Statistic with High Precision | |

wip/py-myfitter | Maximum Likelihood Fits in Python | |

wip/rk | Relativistic Kinematics | |

wip/dispred | Tools for calculating DIS cross sections at LO and NLO in QCD | |

wip/circe2 | CIRCE1 is WHIZARDs generator for lepton collider beamstrahlung | |

wip/py-dexy_viewer | Document Automation viewer | |

wip/py-pebl | Python Environment for Bayesian Learning | |

wip/py-nipy | Python package for analysis of neuroimaging data | |

wip/py-drawnow | MATLAB-like drawnow | |

wip/py-thermopy | Some utilities for Thermodynamics and Thermochemistry | |

wip/py-cf-python | Python interface to the CF data model | |

wip/thepeg | Toolkit for High Energy Physics Event Generation | |

wip/py-EMpy | Suite of numerical algorithms widely used in electromagnetism | |

wip/py-astlib | Set of python modules for producing simple plots, statistics | |

wip/py-fwarp | Tool to wrap Fortran 77/90/95 code in C, Cython & Python | |

wip/gappa | Formal tool for certifying numerical applications | |

wip/py-odeint | Python binding for odeint from boost | |

wip/py-csp | Brings CSP (communicating sequential processes) to Python | |

wip/py-cogent | Cogent A toolkit for statistical analysis of biological sequences | |

wip/py-ssp | Python speech signal processing library for education | |

wip/py-pyvib2 | Analyzing vibrational motion and vibrational spectra | |

wip/py-fuzzpy | Fuzzy sets, graphs, and mathematics for Python | |

wip/bigdft | Massively parallel electronic structure code using a wavelet basis set | |

wip/py-sode | Python/Cython lib for solving Stochastic Ordinary Differential Equations | |

wip/py-goulib | Library of useful Python code for scientific + technical applications | |

wip/cmetrics | Size and complexity metrics for C source code files | |

wip/py-scikits_ann | Approximate Nearest Neighbor library wrapper for Numpy | |

wip/py-jbessel | Bessel functions of the first kind written in Cython | |

wip/py-kabuki | Easy creation of hierarchical bayesian models | |

wip/chani | Tool for transient simulation of charge transport | |

wip/py-pycifrw | CIF/STAR file support for Python | |

wip/py-lsqfit | Utilities for nonlinear least-squares fits | |

wip/py-solpy | Solar Performance and Design library | |

wip/colorfull | ColorFull is a C++ code for calculations in QCD color space | |

wip/py-ctutils | Tools for analyzing data in CT scans | |

wip/py-opentmm | OpenTMM is an object-oriented electrodynamic S-matrix | |

wip/py-tklsystem | Tkinter interface to work with L-System equations | |

wip/py-lire | Python/Cython port of Lire image processing algorithms | |

wip/py-joblib | Lightweight pipelining: using Python functions as pipeline jobs | |

wip/py-hddm | Hierarchical Bayesian estimation of Drift Diffusion Models | |

wip/py-nipy-data | Installation script for nipy data packages | |

wip/py-pet | Toolkit for numerical simulations to allow easy parameter | |

wip/py-fnss | Fast creation and configuration of topologies, traffic matrices | |

wip/py-bctpy | Brain Connectivity Toolbox for Python | |

wip/probcons | Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences | |

wip/minuit2 | MINUIT is a physics analysis tool for function minimization | |

wip/py-neurolab | Simple and powerfull neural network library for python | |

wip/py-checkmate | Tool to easily test simulated event files against LHC results | |

wip/partonevolution | Fast Evolution of Parton Distributions | |

wip/py-cxvpy | DSL for modeling convex optimization problems in Python | |

wip/py-nlib | Numeric/scientific algorithms which do not required numpy | |

wip/analizo | Extensible source code analysis and visualization toolkit | |

wip/jython | Python for the Java Platform | |

wip/py-hdf5storage | Utilities to read/write Python types to/from HDF5 files | |

wip/py-utilib_math | PyUtilib math utilities | |

wip/py-hdf5able | Serialisation interface from ndarray-focused objects to HDF5 | |

wip/py-delay | Python tool for solving delay differential equations | |

wip/py-multichain_mcmc | Multichain MCMC framework and algorithmse | |

wip/py-sima | Software for analysis of sequential imaging data | |

wip/py-theano | Optimizing compiler for evaluating mathematical expressions | |

wip/mmdb | Macromolecular coordinate library | |

wip/reinteract | Reinteract is a system for interactive experimentation with Python | |

wip/py-nodepy | Numerical ODE solvers in Python | |

wip/fxrays | Computes extremal rays with filtering | |

wip/py-cosmolopy | Python for Cosmology | |

wip/py-fipy | Finite volume PDE solver in Python | |

wip/py-gatspy | General tools for Astronomical Time Series in Python | |

wip/py-qitensor | Quantum Hilbert Space Tensors in Python and Sage | |

wip/py-shapely | Geometric objects, predicates, and operations | |

wip/py-gmpy2 | GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x | |

wip/py-fatiando | Geophysical direct and inverse modeling | |

wip/py-aqopa | Automated Quality of Protection Analysis Tool for QoP-ML models | |

wip/py-scikits_vectorplot | Vector fields plotting algorithms | |

wip/py-scikits_timeseries | Time series manipulation | |

wip/ghmm | General Hidden Markov Model Library in C | |

wip/py-aikif | Artificial Intelligence Knowledge Information Framework | |

wip/py-t3m | Tinker toys for topologists | |

wip/py-pyon | Lattice QCD library including statistical, fitting, plotting functions | |

wip/py-chealpy | Python Binding of chealpix | |

wip/py-cesium | Machine Learning for Time Series Analysis Platform | |

wip/py-neo | Python package for representing electrophysiology data | |

wip/stksolver | Stokes flow solver using the boundary element method | |

wip/py-lifelines | Including Kaplan Meier, Nelson Aalen and regression | |

wip/py-operators | Operators and solvers for high-performance computing | |

wip/py-gpaw | Grid-based real-space PAW method DFT code | |

wip/py-quaternions | Package to handle quaternions | |

wip/py-swiginac | Interface to GiNaC, providing Python with symbolic mathematics | |

wip/py-uncertainties | Support for physical quantities with units, based on numpy | |

wip/py-tmatrix | Python code for T-matrix scattering calculations | |

wip/elegent | Generator of elastic (anti)proton-proton collisions | |

wip/libzn-poly | Libzn_poly is a C library for polynomial arithmetic in Z/nZ[x] | |

wip/libcuba | Library for multidimensional numerical integration | |

wip/py-dimarray | Numpy array with labelled dimensions and axes, dimension | |

wip/py-utilib_common | Commonly used PyUtilib data and methods | |

wip/jason | Java-based interpreter for an extended version of AgentSpeak | |

wip/py-math-snappy | Program for studying the topology and geometry of 3-manifolds | |

wip/py-qnet | Tools for symbolically analyzing quantum feedback networks | |

wip/py-blaze | NumPy and Pandas interface to Big Data | |

wip/py-nexpy | Python GUI to analyze NeXus data | |

wip/py-thLib | Collection of Python utilities for signal analysis | |

wip/py-utilib_component_executables | PyUtilib plugin for managing executables | |

wip/py-aopython | Aspect Oriented Python | |

wip/py-teafiles | Time Series storage in flat files | |

wip/py-gammafit | Derivation of non-thermal particle distributions MCMC spectraly | |

wip/py-simulators | Tools to build an instrument model | |

wip/py-scikit-aero | Aeronautical engineering calculations in Python | |

wip/py-geopy | Python Geocoding Toolbox | |

wip/py-neuronpy | The NEURON simulator and analyzing neural data | |

wip/py-netcdf4 | Python/numpy interface to netCDF library (versions 3 and 4) | |

wip/superlfv | Calculate lepton flavor violating observables | |

wip/py-spatialdata | Spatialdata provides transformations among coordinate systems | |

wip/py-cellulist | Periodic cell list | |

wip/py-msdas | Mass Spectrometry analysis | |

wip/py-voropy | Delaunay meshes, Voronoi regions | |

wip/py-utilib_component_config | Extensions for configuring components in PyUtilib | |

wip/dvegas | Parallel Adaptive Monte Carlo Integration in C++ | |

wip/py-mpi4py | MPI for Python - Python bindings for MPI | |

wip/cliquer | C routines for finding cliques in an arbitrary weighted graph | |

wip/yoda | Yet more Objects for Data Analysis | |

wip/py-delny | Python module for delaunay triangulation | |

wip/macaulay2 | Macaulay2 a software system for research in algebraic geometry | |

wip/py-bigfloat | Arbitrary precision correctly-rounded floating point arithmetic | |

wip/cgnslib | CFD General Notation System library code | |

wip/py-chemview | Interactive molecular viewer for IPython notebook | |

wip/py-matplottheme | MatPlotTheme is a theming library for MatPlotLib | |

wip/py-dana | Framework for distributed, asynchronous and adaptive computing | |

wip/cartago | Framework for programming and executing environments in multi-agent | |

wip/py-parameters | Hierarchical parameter sets for modelling and simulation | |

wip/py-cxnet | Complex networks in education | |

wip/libfplll | Library for LLL-reduction of Euclidean lattices | |

wip/py-msumastro | Process FITS files | |

wip/py-rpncalc | RPN Calculator For Python | |

wip/py-ccdproc | Stropy affiliated package | |

wip/py-mendeleev | Database of atomic properties for elements in the periodic table | |

wip/py-reducer | Process FITS files | |

wip/py-csb | Computational Structural Biology Toolbox | |

wip/py-sppy | Sparse matrix package based on Eigen | |

wip/py-chemlab | The python chemistry library you were waiting for | |

wip/py-mahotas | Mahotas: Computer Vision Library | |

wip/py-ncpol2sdpa | Converter from noncommutative variables to sparse SDPA | |

wip/mopac7 | Semi-empirical Quantum Chemistry Library | |

wip/silo | Mesh and filed I/O library and scientific databases | |

wip/py-fdasrsf | Functional data analysis using the square root slope framework | |

wip/libpsurface | Library that handles piecewise linear bijections | |

wip/fftjet | Multiresolution jet reconstruction in the Fourier domain | |

wip/py-blosc | Blosc is a high performance compressor optimized for binary data | |

wip/py-odesys | Straightforward numerical integration of ODE systems from SymPy | |

wip/py-numberjack | Python platform for combinatorial optimization | |

wip/py-pypol | Python module to manage monomials and polynomials | |

wip/oslc | Open Source License Checker | |

wip/py-grpy | Small GR-oriented package which uses sympy | |

wip/lbt | Converts from LTL formulas to Büchi automata | |

wip/mplabs | Multiphase lattice boltzmann suite | |

wip/py-colorpy | Handling physical descriptions of color and light spectra | |

wip/py-scalpy | ScalPy: A python tool to study dynamical systems in cosmology | |

wip/py-equation | General Equation Parser and Evaluator | |

wip/py-thermistor | Thermistor voltage to temperature and associated utilites | |

wip/py-hamopy | Heat, air and moisture transfer modelling in python | |

wip/py-sdeint | Numerical integration of stochastic differential equations | |

wip/lissac | Lisaac is the first compiled POO based on prototype concepts | |

wip/py-smcp | Python extension for solving sparse matrix cone programs | |

wip/siscone | C++ code for a Seedless Infrared-Safe Cone jet finder | |

wip/py-tsgeom | Python package for computing simple geometries on TS data | |

wip/py-fssa | Package for finite-size scaling analysis at phase transitions | |

wip/py-cexprtk | Cython wrapper the C++ Mathematical Expression Toolkit Library | |

wip/py-qequ | Command-line quadratic equation solver | |

wip/py-mne | MNE python project for MEG and EEG data analysis | |

wip/py-bicho | Bug tracking system tool analyzer | |

wip/py-nilearn | Statistical learning for neuroimaging in Python | |

wip/py-sphereTS | Calculates the acoustic of an elastic sphere immersed in a fluid | |

wip/py-arxvier | Unofficial API tool for arxiv.org scientific publications | |

wip/py-algebraixlib | Data algebra library | |

wip/py-fiona | Fiona reads and writes spatial data files | |

wip/py-cligj | Click params for commmand line interfaces to GeoJSON | |

wip/py-gsw | Gibbs SeaWater Oceanographic Package of TEOS-10 | |

wip/py-ioflo | TODO: Short description of the package | |

wip/py-fluiddyn | Framework for studying fluid dynamics. | |

wip/py-ionize | Package for calculating electrolyte properties. | |

wip/py-ars | Physically-accurate robotics simulator | |

wip/py-easymodeler | Simple ODE Tools for Modelers | |

wip/py-cobra | Constraints-based modeling of biological networks | |

wip/nightfall | Application for a producing a best-fit model for a binary star | |

wip/spade | SPADE is an agent platform based on the XMPP/Jabber technology | |

wip/py-inspyred | Bio-inspired computational intelligence algorithms in Python | |

wip/py-pysb | Python Systems Biology modeling framework | |

wip/py-flipper | Manipulating curves and measured laminations on surfaces | |

wip/py-sympycore | SympyCore an efficient pure Python Computer Algebra System | |

wip/py-scikits_scattpy | Light Scattering methods for Python | |

wip/py-scikit-image | Image processing routines for SciPy | |

wip/py-recluse | Reproducible Experimentation for Computational Linguistics Use | |

wip/gmm | Gmm++ is a generic C++ template library for sparse | |

wip/py-exocode | Automation of debris disk detection | |

wip/py-radontea | Collection of algorithms to compute the inverse Radon transform | |

wip/py-pythia | Framework for specifying and staging complex, multi-physics simulations | |

wip/cloog | The CLooG Code Generator in the Polyhedral Models Home | |

wip/py-gmane | Utilities for the analysis of the GMANE email list database | |

wip/py-pymc | Markov Chain Monte Carlo sampling toolkit | |

wip/lhapdf | Les Houches Accord PDF library and interface | |

wip/py-xcal-raman | Module for x-axis calibration of Raman spectrometers | |

wip/py-lea | Discrete probability distributions in Python | |

wip/etos | Efficient technology of spike-sorting | |

wip/py-scs | Scs: splittling cone solver | |

wip/py-gvar | Utilities for manipulating Gaussian random variables | |

wip/py-oasa | Python library for manipulation of chemical formats | |

wip/py-formex | Tool to generate and manipulate complex 3D geometries | |

wip/py-cse | Python computations in science and engineering | |

wip/py-mcerp | Real-time latin-hypercube-sampling-based Monte Carlo Error Propagation | |

wip/py-pyflation | Calculating cosmological perturbations during an inflationary | |

wip/py-gwpy | Package to enable gravitational-wave astrophysics in Python | |

wip/py-tappy | Tidal analysis program in python | |

wip/py-paegan | Processing and Analysis for Numerical Data | |

wip/py-luminous | Optical Transfer Matrix and simple Quantum Well modelling | |

wip/py-qutip | Quantum Toolbox in Python | |

wip/py-sunpy | Python for Solar Physicists | |

wip/py-cameo | Computer aided metabolic engineering & optimziation | |

wip/py-tardis-sn | TARDIS - Temperature And Radiative Diffusion In Supernovae | |

wip/py-parakeet | Runtime compiler for numerical Python | |

wip/nsp | Scientific software package similiar to Matlab, Scilab, octave | |

wip/oneloop | Evaluate the one-loop scalar 1-point, 2-point, 3-point | |

wip/triangle | Two-Dimensional Quality Mesh Generator and Delaunay Triangulator | |

wip/qcdloop | Repository of one-loop scalar Feynman integrals | |

wip/py-openopt | Python module for numerical optimization | |

wip/py-decimalfp | Decimal fixed-point arithmetic | |

wip/py-bolos | Library to solve the Boltzmann equation | |

wip/chemeq | Chemical Equation Parser and Renderer | |

wip/py-cythongsl | Cython declarations for the Gnu Scientific Library | |

wip/py-mailingstats | Mailing List Stats is a tool to parse and analyze mail boxes | |

wip/py-minepy | Maximal Information-based Nonparametric Exploration | |

wip/py-traitsgui | Traits-capable windowing framework | |

wip/py-cvxpy | Python software for convex optimization | |

wip/py-symath | symbolic mathematics for python | |

wip/py-scitools | Python library for scientific computing | |

wip/py-pot | Python Library for Robot Control | |

wip/py-pseudopy | Compute and visualize pseudospectra of matrices | |

wip/tnt | Template Numerical Toolkit | |

wip/hztool | Robust model-to-data comparisons | |

wip/py-linop | Pythonic abstraction for linear mathematical operators | |

wip/py-gts | Python bindings for GNU Triangulated Surface Library | |

wip/py-scikits_talkbox | Talkbox, a set of python modules for speech/signal processing | |

wip/py-qecalc | Wrapper for Quantum Espresso | |

wip/feynhiggs | Fortran code for the diagrammatic calculation of the masses | |

wip/py-vispy | Interactive visualization in Python | |

wip/mcl | Markov Cluster algorithm | |

wip/symbolic++ | C++ and POO programming to develop a computer algebra system | |

wip/py-qmath | Provides a class for deal with quaternion algebra and 3D rotation | |

wip/py-neupy | Artificial Neural Network library implemented in Python | |

wip/nsc2ke | Navier-Stokes solver | |

wip/py-linearalgebra | Tools for working with matrices and vectors | |

wip/py-deltasigma | Scale and map to implementable topologies delta sigma modulators | |

wip/py-cbc | Gravitational wave CBC analysis toolkit | |

wip/py-icane | Python wrapper for ICANE Statistical Data and Metadata API | |

wip/py-escher | Build, view, share, and embed pathway maps | |

wip/py-gauss | Python API for Analysis of Gaussian Quantum Chemical Compuations | |

wip/py-traits | Manifest typing and reactive programming for Python | |

wip/py-mdp | Modular toolkit for data processing | |

wip/lcalc | Lcalc is a program for calculating with L-functions | |

wip/bertini | Software for Numerical Algebraic Geometry | |

wip/py-mipp | Meteorological ingest processing package | |

wip/py-utilib_misc | Miscellaneous PyUtilib utilities | |

wip/netlogo | NetLogo is a multi-agent programmable modeling environment | |

wip/py-owslib | OGC Web Service utility library | |

wip/py-pyaiml | PyAIML is an interpreter for AIML | |

wip/py-spams | SPArse Modeling Software for solving various sparse estimation | |

wip/py-hessianfree | Hessian-free optimization for deep networks | |

wip/py-fealty | Discretised field utilities | |

wip/py-fcsparser | Python package for reading raw fcs files | |

wip/py-b3j0f.aop | Python Aspect Oriented Programming | |

wip/py-fmmlib | Python wrappers for particle FMMs | |

wip/py-neqsys | Numerical solving of symbolic systems of non-linear equations | |

wip/py-spm1d | One-Dimensional Statistical Parametric Mapping | |

wip/py-ahoy | Agent-based simulations of active particles | |

wip/py-cmtoolkit | Unofficial Python port of the conformalmapping MATLAB toolbox | |

wip/py-goreutilities | Some utility functions useful for GoreLab members | |

wip/py-vtk | PyVTK - tools for manipulating VTK files in Python | |

wip/py-graphsim | Graph similarity algorithms based on NetworkX | |

wip/py-galry | High-performance interactive visualization in Python | |

wip/py-opensimplex | OpenSimplex n-dimensional gradient noise function. | |

wip/py-nsim | Simulate systems from ODEs or SDEs, analyze time series | |

wip/py-trottersuzuki | Massively parallel implementation of the Trotter-Suzuki decomposition | |

wip/py-karta | Geospatial analysis in Python | |

wip/cubature | Multi-dimensional integration | |

wip/py-larlib | Linear algebraic representation of topology and geometry | |

wip/py-proj | Python interface to PROJ.4 library | |

wip/py-meshio | I/O for various mesh formats | |

wip/py-nosh | Nonlinear Schrodinger equations | |

wip/py-twistml | TWItter STock market Machine Learning package | |

wip/py-sofa | Python ctypes wrapper around the SOFA astronomical library | |

wip/py-wasanbon | Development Framework for Robotics Technology Middleware | |

wip/concorde | Combinatorial Optimization package | |

wip/py-gpkit | Defining and manipulating geometric programming models | |

wip/py-trimesh | Import, export, process, analyze and view triangular meshes | |

wip/py-lenstools | Toolkit for Weak Gravitational Lensing analysis | |

wip/py-fdm | Framework for solving PDEs with FDM using Python | |

wip/py-geographiclib | Translation of the GeographicLib::Geodesic class to Python | |

wip/py-nzmath | Number theory oriented calculation system | |

wip/py-mave | Library for Measurement and Verification | |

wip/py-naima | Derivation of non-thermal particle through MCMC spectral fitting | |

wip/lambertw | Lambert W Function for Applications in Physics | |

wip/py-spatious | Distance and geometry utilities | |

wip/py-asciidata | Asciidata , to handle (read/modify/write) ASCII tables | |

wip/py-chaos | UIC REU on Chaos, Fractals and Complex Dynamics | |

wip/py-achemkit | Artificial Chemistry Tookit | |

wip/py-corrfitter | Utilities for fitting correlators in lattice QCD | |

wip/py-metropack | Pack spheres in a finite space | |

wip/py-ecos | Embedded Cone Solver | |

wip/py-csa | The Connection-Set Algebra implemented in Python | |

wip/dune-istl | Iterative Solver Template Library | |

wip/palp | Analyzing lattice polytopes | |

wip/py-complexsystems | Toolbox for Complex Sytems | |

wip/libnestedsums | Library for the expansion of transcendental functions | |

wip/py-mathjspy | Evaluate mathematical expressions in the same manner as MathJS | |

math/py-fftw | Python bindings to the FFTW3 C-library | |

wip/py-mpop | Meteorological post processing package | |

wip/py-xarray | N-D labeled arrays and datasets in Python | |

wip/higgsbounds | Selection of Higgs sector predictions for any particular model | |

wip/py-algebraic | Algebraic modeling system for Python | |

wip/py-ase | Atomic Simulation Environment | |

wip/py-chompack | Library for chordal matrix computations | |

wip/py-fwm-ensayo | Fortran package to work with watersheds and do hydrologic | |

wip/py-kiwisolver | Fast implementation of the Cassowary constraint solver | |

wip/py-netflowvizu | Network flow visualizer | |

wip/py-prody | Python Package for Protein Dynamics Analysis | |

wip/py-rebound | Open-source multi-purpose N-body code | |

wip/genus2reduction | Conductor and Reduction Types for Genus 2 Curves | |

wip/py-gwsurrogate | Easy to use interface to gravitational wave surrogate models | |

wip/py-brian | Simulator for spiking neural networks | |

wip/py-scipy-data_fitting | Data fitting system with SciPy | |

wip/py-nphelper | Convenient numpy helper functions | |

wip/py-constraint | Python module implementing support for handling CSPs | |

wip/py-adsbibdesk | Add papers from arxiv.org or NASA/SAO ADS to your BibDesk bibliography | |

wip/py-dclab | Data analysis for real-time deformability cytometry | |

wip/py-dubins | Code to generate and manipulate dubins curves | |

wip/modglue | C++ library for handling co-processes | |

wip/py-pydy-viz | Browser based 3D visualization of multibody simulations | |

wip/py-nptdms | NumPy based module for reading TDMS files produced by LabView | |

wip/py-pydy | Python tool kit for multi-body dynamics | |

wip/py-chaco | Chaco is a Python plotting application toolkit | |

wip/py-pyquante | Quantum chemistry in Python | |

wip/tmva | Toolkit for Multivariate Data Analysis with ROOT | |

wip/py-nimfa | Python Library for Nonnegative Matrix Factorization Techniques | |

wip/py-mcint | Simple tool to perform numerical integration using MC techniques | |

wip/py-larry | Label the rows, columns, any dimension, of your NumPy arrays | |

wip/py-mark | RDF Bookmarking Utilities | |

biology/bodr | Blue Obelisk Data Repository | |

wip/py-pyslha | Parsing, manipulating, and visualising SUSY Les Houches Accord data | |

wip/py-hope | Python Just-In-Time compiler for astrophysical computations | |

wip/py-clnum | Rational and arbitrary precision floating point numbers | |

wip/py-hmf | Halo mass function calculator | |

wip/py-da | Pyda is a general object-oriented data assimilation package | |

wip/gerris | Software the solution of the PDE describing fluid flow | |

wip/py-markovchain | Simple markov chain implementation | |

wip/py-verilog | Python-based Hardware Design Processing Toolkit for Verilog HDL | |

wip/py-gosam | Automated One-Loop matrix element generator | |

wip/py-astropy | Community-developed python astronomy tools | |

wip/py-dolo | Economic modelling in Python | |

wip/py-qit | Quantum Information Toolkit | |

wip/py-affine | Matrices describing affine transformation of the plane | |

wip/py-cosat | bindings to picosat (a SAT solver) | |

wip/py-symeig | Symmetrical eigenvalue routines for NumPy | |

wip/py-nupic | Numenta Platform for Intelligent Computing | |

wip/py-fanova | Functional ANOVA | |

wip/py-applpy | ApplPy is a computational probability package written in Python | |

wip/plasti | Plasti is a 2D ALE (Arbitrary Lagrangian Eulerian) code | |

wip/py-sep | Astronomical source extraction and photometry library | |

wip/py-cerridwen | Accurate solar system data for everyone | |

wip/ised | Tool for generating number sequences and arithmetic evaluation | |

wip/libecc | C++ elliptic curve library | |

wip/py-feyn | Easy-to-use Python library to help physicists draw Feynman diagrams | |

wip/py-forthon | Fortran95 wrapper/code development package | |

wip/py-krylov | Python package implementing common Krylov methods | |

wip/petsc | Portable, Extensible Toolkit for Scientific Computation | |

wip/py-biofrills | Bioinformatics utilities for molecular sequence analysis | |

wip/py-iisignature | Iterated integral signature calculations | |

math/py-patsy | Python package for describing statistical models | |

math/py-statsmodels | Statistical computations and models for use with SciPy | |

wip/py-knnimpute | K-Nearest Neighbor imputation | |

wip/py-downhill | Stochastic optimization routines for Theano | |

wip/py-engfmt | Read and write in engineering notation | |

wip/py-keras | Deep Learning for Python | |

wip/py-poppy | Physical optics propagation for optical simulations | |

wip/py-hamnonlineng | Engineering Hamiltonians through Nonlinearities | |

wip/py-annarchy | Artificial Neural Networks architect | |

wip/py-lmfit | Least-Squares Minimization with Bounds and Constraints | |

wip/py-upsilon | Automated Classification of Periodic Variable Stars | |

wip/py-chainer | Flexible framework of neural networks | |

wip/py-cva | Calculus of Variations Solver | |

wip/py-vespa | Calculate astrophysical false positive probabilities | |

wip/py-hybridlfpy | Methods to calculate LFPs with spike events from network sim | |

wip/py-jitcode | Just-in-Time Compilation for Ordinary Differential Equations | |

wip/py-clid | Simple vector mathematics library | |

wip/py-gbpy | Calculating the geometric properties of interfaces in crystals | |

wip/spai | Sparse Approximate Inverses | |

wip/py-gem | Math library for game programming in python | |

wip/py-hyperspy | Multidimensional data analysis toolbox | |

wip/py-gorm | Database-backed versions of the standard networkx graph classes | |

wip/py-causalinfo | Information Measures on Causal Graphs | |

wip/py-datamarix | Intuitive, Pythonic way to work with tabular data | |

wip/py-pseudorandom | Generating pseudorandom condition/stimulus for psychological | |

wip/py-periodictable | Extensible periodic table of the elements | |

wip/elk | All-electron full-potential linearised augmented-planewave | |

wip/py-glespy | Bindings for GLESP for calculations with spherical harmonics | |

wip/py-fluids | Fluid dynamics component of Chemical Engineering Design Library | |

wip/py-symcxx | SymCXX is an experimental Python for symbolic manipulation | |

wip/py-spotpy | Statistical Parameter Optimization Tool | |

wip/py-qexpy | Analysis and data plotting aimed at undergraduate physics | |

wip/py-pgmpy | Library for Probabilistic Graphical Models | |

wip/py-dynamicisttoolkit | Various tools for theoretical and experimental dynamics | |

wip/py-bandicoot | Toolbox to analyze mobile phone metadata | |

wip/py-nfg | Python package for implementing and solving Network form games | |

wip/py-fcn | Fully Convolutional Networks | |

wip/py-chebfun | Python Chebyshev Functions | |

wip/py-graphs | Library for graph-based machine learning | |

wip/py-christofides | Christofides Algorithm for TSP | |

wip/py-cnfgen | CNF formula generator | |

wip/py-atpy | Astronomical Tables in Python | |

wip/py-scikit-monaco | Python modules for Monte Carlo integration | |

wip/py-model-builder | Graphical ODE simulator | |

math/py-abcpmc | Approximate Bayesian Computation Population Monte Carlo | |

wip/exhume | Monte Carlo simulation of central exclusive production | |

wip/agile | Interface for a variety of Fortran-based Monte Carlo generators | |

wip/py-atmos | Atmospheric sciences utility library | |

wip/py-vo | Python based tools to parse/write VOTABLE file | |

wip/py-hepcrawl | Scrapy project for feeds into INSPIRE-HEP | |

wip/orbifolder | Study the Low Energy Effective Theory of Heterotic Orbifolds | |

wip/py-speview | Program to display binary SPE files containing Raman spectra | |

wip/py-pygr | Pygr graph database for bioinformatics | |

wip/py-aesthete | Integrated mathematics environment | |

wip/py-varify | Clinical DNA Sequencing Analysis and Data Discovery | |

wip/py-debinning | The bias inherent when binning data into histograms | |

wip/py-magnitude | Python library for computing with numbers with units | |

wip/bagel | Domain specific compiler for lattice QCD | |

wip/py-epigrass | Epidemiological Geo-Referenced Analysis and Simulation System | |

wip/py-harvestingkit | Kit of tools to convert publisher XML(NLM/JATS)to MARCXML | |

wip/py-epipy | Python tools for epidemiology | |

wip/py-pylith | Finite element code for solving dynamic and quasi-static tectonic deformation problems | |

wip/py-pint | Physical quantities module | |

wip/qrint | Orthonormal integrators | |

wip/py-pweave | Scientific reports with embedded python computations | |

wip/py-bxa | Bayesian X-ray spectral analysis | |

wip/xmakemol | Program for visualizing atomic and molecular systems | |

wip/schur | Calculating properties of Lie groups and symmetric functions | |

wip/py-eemeter | Open Energy Efficiency Meter | |

wip/py-thermostat | Calculate connected thermostat savings | |

wip/py-toeplitz | Wrapper for fortran 90 toeplitz package | |

wip/py-voronoi | Cython wrapper for the Boost Voronoi library | |

wip/py-jelly | Abstraction layer for running numerical hydrodynamics software | |

wip/py-concepts | Formal Concept Analysis with Python | |

wip/py-cclib | Parsers and algorithms for computational chemistry | |

wip/singular | SINGULAR is a Computer Algebra System for polynomial computations | |

wip/csp2b | The csp2B Tool written in Moscow ML | |

wip/py-sasa | SAIL/AIL Sentiment Analyzer | |

wip/py-seaborn | Statistical data visualization | |

wip/galoisfieldarth | Galois Field Arithmetic Library | |

wip/py-aigo | Analysis and Inter-comparison of Gene Ontology functional annotations | |

wip/py-gpy | The Gaussian Process Toolbox | |

wip/py-flavio | Flavour physics phenomenology in the Standard Model and beyond | |

wip/py-paramz | The Parameterization Framework | |

wip/sector-decomposition | Used to compute numerically the Laurent expansion of Feynman integrals | |

wip/py-bloscpack | Command line interface to and serialization format for Blosc | |

wip/py-calphad | Thermodynamic models, calculating phase diagrams | |

wip/py-griddata | Interpolate irregularly spaced data to a grid | |

wip/py-pythics | Python Instrument Control System | |

wip/py-ift-nifty | Numerical Information Field Theory | |

wip/py-krypy | Krylov subspace methods for linear systems | |

wip/py-mvpoly | Library for multivariate polynomials | |

wip/py-papy | Parallel Pipelines In Python | |

wip/py-pyfaces | Traits-capable windowing framewor | |

wip/py-pymbolic | Python package for symbolic computation | |

wip/hawk | HAWK is a Monte Carlo integrator for pp -> H + 2jets | |

wip/py-pyrr | 3D mathematical functions using NumPy | |

wip/py-gslodeiv2 | Python binding for odeiv2 in GNU Scientific Library (GSL) | |

wip/py-hcluster | Hierarchical Clustering Package For Scipy | |

wip/py-imreg-dft | Image registration utility using discrete Fourier transform | |

wip/py-scikit-nano | Python toolkit for generating nano-structures | |

wip/py-sumatra | Tracking projects based on numerical simulation or analysis | |

wip/pythontoolkit | PythonToolkit (PTK) an interactive python environment | |

wip/simpa | Agent-oriented framework for concurrent, multi-core, distributed programming | |

wip/py-z2pack | Computation of topological numbers of band-structures | |

wip/py-yellowhiggs | Interface for the CERN Yellow Report | |

wip/py-louvain | Methods of community detection in large networks | |

wip/blad | Bibliotheques Lilloises Algebre Differentielle | |

textproc/py-numpydoc | Sphinx extension to support docstrings in Numpy format | |

wip/py-mdtraj | The analysis of molecular dynamics trajectories | |

wip/py-eigency | Cython interface between the numpy arrays and the Matrix/Array | |

wip/py-fancyimpute | Matrix completion and feature imputation algorithms | |

wip/py-pynn | Python package for neuronal network models | |

wip/py-metrics | Metrics for python files |