./math/R-car, Companion to Applied Regression

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Branch: CURRENT, Version: 3.0.13, Package name: R-car-3.0.13, Maintainer: pkgsrc-users

Functions to Accompany J. Fox and S. Weisberg, An R Companion to
Applied Regression, Third Edition, Sage, in press.

Required to run:
[math/R-abind] [math/R] [math/R-quantreg] [math/R-lme4] [math/R-pbkrtest] [math/R-carData] [geography/R-maptools] [devel/R-rio]

Required to build:

Master sites: (Expand)

Version history: (Expand)

CVS history: (Expand)

   2022-05-22 01:09:12 by Makoto Fujiwara | Files touched by this commit (2)
Log message:
(math/R-car) Updated 3.0.11 to 3.0.13

Changes to Version 3.0-13

  o Handle singularities better in Anova.mlm() (suggestion of Marius Barth).

  o Fixed error reporting in logit() (bug reported by Collin Erickson).

  o Added pt.cex and cex sub-arguments to legend argument of
  scatterplotMatrix() (implicit suggestion of Duncan Mackay).

  o New vif.lm() method with options for handling linear models with interactions.

  o Fixed bug in cooks.distance.influence.lme() (in effect, incorrect
  division by the error variance twice rather than once), and a sign
  error in dfbeta.influence.lme() and dfbetas.influence.lme()
  (following report by Ben Bolker).

  o Added an error.df argument to the default methods of
  linearHypothesis() and Anova() for computing F-tests; if the
  argument is unspecified, then df.residual() is applied to the model,
  and if df.residual() returns NULL or NA, then an asymptotic
  chi-square test is substituted for the F-test (in response to a
  report by Adrian Olszewski that Anova() fails for gls models when an
  F-test is requested).

Changes to Version 3.0-12

  o The 'rio` package is now suggested, not required.  To use the
  Import() and Export() functions users may need to install rio using

  o hccm() now reports an interpretable error, except for type = "hc0"
  or "hc1", when there are cases with hatvalues = 1 (following problem
  reported by Peng Ding).

  o Fix bug in rownames in dfbetasPlots.lm() (reported by Shu Fai

  o Package 'rio' was moved from Imports to Suggests. Both Import()
  and Export() now check for the availability of 'rio' first and
  report an error otherwise.
   2021-10-26 12:56:13 by Nia Alarie | Files touched by this commit (458)
Log message:
math: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 16:28:36 by Nia Alarie | Files touched by this commit (458)
Log message:
math: Remove SHA1 hashes for distfiles
   2021-09-11 14:31:42 by Makoto Fujiwara | Files touched by this commit (2)
Log message:
(math/R-car) Updated 3.0.10 to 3.0.11

Changes to Version 3.0-11

  o boxCox() function now allows the use of any of the usual graphics
    parameters in the plot() function.  If particuar boxCox(model,
    main="my title") will add a title to the plot, and boxCox(model,
    main="") will suppress it.

  o car::Boot(object, method="residual") will work for
    method="residual" only if the car package has been previously
    attached via either library(car) or require(car).

  o Added error checking with vcov. argument.  Changed vcov.boot to
    print a warning of bootstrap replicates that returned NA

  o Introduced brief.tbl(), which simply calls print(), to cope with
    changes to tibbles.

  o qqPlot() fills (shades) confidence envelopes by default, and
    smoothers for scatterplots fill variance (spread) envelopes by
    default (suggestions of Michael Friendly).

  o Fixed problem in infIndexPlot.influence.lme() (reported by Francis
    L. Huang).

  o New "polr" and "svyolr" methods for vif() (following \ 
report by
    Abra Jeffers).

  o Make linearHypothesis() and Anova() work with "svyolr" objects via
    their default methods.

  o Regularize handling of vcov. argument in Anova() and

  o vcov. argument now works with Anova() for models produced by
    lme4::lmer() and glmer(), (fixing a bug reported by Amy MacDougall).

  o New linearHypothesis.lmList() method.

  o New "lm" method for symbox().

  o New cex and pt.wts arguments for avPlot() "lm" and "glm" \ 
    and for mcPlot.lm().

  o Fix handling of imatrix argument to Anova.mlm() (suggestion of
    Benedikt Langenberg).

  o Remove influence.merMod() and related methods in favor of versions
    of these methods in the lme4 package.

  o Rewrite "embedding" vignette.

  o Small fixes and improvements.
   2020-10-02 12:31:59 by Wen Heping | Files touched by this commit (2)
Log message:
Update to 3.0.10

Upstream changes:
Changes to Version 3.0-10

  o Fixed as error when using parameter name "(Intercept)" with \ 

  o Several changes to Boot() to correct bugs, support the plinear algorithm, to \ 
correct use of weights for lm, and allow use of weights for nls.

  o Fix quantregLine() to work with development version 5.69 of quantreg package \ 
(following heads-up from Roger Koenker).
   2020-09-21 01:46:00 by Makoto Fujiwara | Files touched by this commit (2)
Log message:
(math/R-car) Updated 3.0.3 to 3.0.9. make test fails

Changes to Version 3.0-9

  o Declare linearHypothesis.survreg() method, previously omitted from
    NAMESPACE (following question by Robert Dinterman); tweaks to survreg
    methods for linearHypothesis(), Anova(), and deltaMethod() to make them
    more robust.

  o Fix bug in hccm() when model matrix includes just one column (reported by
    Justin Yap).

  o Fix buglet in scatterplotMatrix.formula() when groups specified.

  o Several functions are now generic: avPlots(), ceresPlots(), crPlots(),

  o Enable spread smoothers for crPlot(), ceresPlot(), and residualPlot()
    (suggestion of Dave Armstrong).

  o Small changes to docs.

Changes to Version 3.0-8

  o Import() now defaults to stringsAsFactors=FALSE to match the default
    behavior of read.table() as of R 4.0.0.

  o New strings2factors() function to convert character variables in a data
    frame to factors.

  o Added data.frame method for S().

  o Fixed a bug in estimateTransform.lm() that returned the correct answer
    with an unneeded warning.

  o Fixed Anova.coxph() to handle weights properly (problem reported by
    Daniel Morillo Cuadrado).

Changes to Version 3.0-7

  o Fixed boxCox(), powerTransform() to work when 'car' package is not attached

  o Fixed Anova() to work with "lme" models without an intercept (to \ 
fix bug
    reported by Benjamin Tyner).

Changes to Version 3.0-6

  o Explicitly import utils::globalVariables() (suggestion of Vince Carey).

Changes to Version 3.0-5

  o Change class(x) == "y" to inherits(x, "y") throughout \ 
code (thanks to Martin Maechler).

Changes to Version 3.0-4

  o Scoping improvements to deltaMethod(), which now also takes an optional
    hypothesized value; contribution and suggestion by Pavel Krivitsky.

  o Make Anova() work for coxph() models with strata (following problem
    reported by Susan Galloway Hilsenbeck).

  o Modify carPalette() to provide a colorblind-friendly palette as an option
    (suggestion of Sercan Kahveci).

  o Small improvements.
   2019-08-08 21:53:58 by Brook Milligan | Files touched by this commit (189) | Package updated
Log message:
Update all R packages to canonical form.

The canonical form [1] of an R package Makefile includes the

- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
  needed), and CATEGORIES.

- HOMEPAGE is not present but defined in math/R/Makefile.extension to
  refer to the CRAN web page describing the package.  Other relevant
  web pages are often linked from there via the URL field.

This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.

[1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
   2018-07-28 16:40:53 by Brook Milligan | Files touched by this commit (126)
Log message:
Remove MASTER_SITES= from individual R package Makefiles.

Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES.  Consequently, it is redundant for the individual
packages to do the same.  Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.